Lysine Glutarylation Is a Protein Posttranslational Modification Regulated by SIRT5

被引:603
作者
Tan, Minjia [1 ,2 ]
Peng, Chao [3 ]
Anderson, Kristin A. [4 ]
Chhoy, Peter [4 ]
Xie, Zhongyu [3 ]
Dai, Lunzhi [3 ]
Park, Jeongsoon [5 ,6 ]
Chen, Yue [3 ]
Huang, He [3 ]
Zhang, Yi [1 ,2 ]
Ro, Jennifer [7 ,8 ]
Wagner, Gregory R. [4 ]
Green, Michelle F. [4 ]
Madsen, Andreas S. [9 ]
Schmiesing, Jessica [10 ]
Peterson, Brett S. [4 ]
Xu, Guofeng [3 ]
Ilkayeva, Olga R. [4 ]
Muehlbauer, Michael J. [4 ]
Braulke, Thomas [10 ]
Muehlhausen, Chris [10 ]
Backos, Donald S. [11 ]
Olsen, Christian A. [9 ]
McGuire, Peter J. [12 ]
Pletcher, Scott D. [7 ,8 ]
Lombard, David B. [5 ,6 ]
Hirschey, Matthew D. [4 ]
Zhao, Yingming [1 ,2 ,3 ]
机构
[1] Chinese Acad Sci, Shanghai Inst Mat Med, Chem Prote Ctr, Shanghai 201203, Peoples R China
[2] Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
[3] Univ Chicago, Ben May Dept Canc Res, Chicago, IL 60637 USA
[4] Duke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27704 USA
[5] Univ Michigan, Dept Pathol, Ann Arbor, MI 48109 USA
[6] Univ Michigan, Inst Gerontol, Ann Arbor, MI 48109 USA
[7] Univ Michigan, Dept Mol & Integrat Physiol, Ann Arbor, MI 48109 USA
[8] Univ Michigan, Geriatr Ctr, Ann Arbor, MI 48109 USA
[9] Tech Univ Denmark, Dept Chem, DK-2800 Lyngby, Denmark
[10] Univ Med Ctr Hamburg Eppendorf, Childrens Hosp, Dept Biochem, D-20246 Hamburg, Germany
[11] Univ Colorado, Skaggs Sch Pharm & Pharmaceut Sci, Computat Chem & Biol Core Facil, Aurora, CO 80045 USA
[12] NHGRI, NIH, Bethesda, MD 20892 USA
基金
美国国家卫生研究院;
关键词
CARBAMOYL-PHOSPHATE SYNTHETASE; ACETYL-COENZYME-A; MOUSE MODEL; SUCCINYLATION; IDENTIFICATION; METABOLISM; NUTRIENT; INSIGHTS; DOMAIN;
D O I
10.1016/j.cmet.2014.03.014
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
We report the identification and characterization of a five-carbon protein posttranslational modification (PTM) called lysine glutarylation (K-glu). This protein modification was detected by immunoblot and mass spectrometry (MS), and then comprehensively validated by chemical and biochemical methods. We demonstrated that the previously annotated deacetylase, sirtuin 5 (SIRT5), is a lysine deglutarylase. Proteome-wide analysis identified 683 Kglu sites in 191 proteins and showed that Kglu is highly enriched on metabolic enzymes and mitochondrial proteins. We validated carbamoyl phosphate synthase 1 (CPS1), the rate-limiting enzyme in urea cycle, as a glutarylated protein and demonstrated that CPS1 is targeted by SIRT5 for deglutarylation. We further showed that glutarylation suppresses CPS1 enzymatic activity in cell lines, mice, and a model of glutaric acidemia type I disease, the last of which has elevated glutaric acid and glutaryl-CoA. This study expands the landscape of lysine acyl modifications and increases our understanding of the deacylase SIRT5.
引用
收藏
页码:605 / 617
页数:13
相关论文
共 45 条
  • [1] The complex language of chromatin regulation during transcription
    Berger, Shelley L.
    [J]. NATURE, 2007, 447 (7143) : 407 - 412
  • [2] Chemical phylogenetics of histone deacetylases
    Bradner, James E.
    West, Nathan
    Grachan, Melissa L.
    Greenberg, Edward F.
    Haggarty, Stephen J.
    Warnow, Tandy
    Mazitschek, Ralph
    [J]. NATURE CHEMICAL BIOLOGY, 2010, 6 (03) : 238 - 243
  • [3] Sirtuins mediate mammalian metabolic responses to nutrient availability
    Chalkiadaki, Angeliki
    Guarente, Leonard
    [J]. NATURE REVIEWS ENDOCRINOLOGY, 2012, 8 (05) : 287 - 296
  • [4] Altered arginine metabolism in the central nervous system (CNS) of the Cln3-/- mouse model of juvenile Batten disease
    Chan, C. -H.
    Ramirez-Montealegre, D.
    Pearce, D. A.
    [J]. NEUROPATHOLOGY AND APPLIED NEUROBIOLOGY, 2009, 35 (02) : 189 - 207
  • [5] Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra
    Chen, Y
    Kwon, SW
    Kim, SC
    Zhao, YM
    [J]. JOURNAL OF PROTEOME RESEARCH, 2005, 4 (03) : 998 - 1005
  • [6] Lysine propionylation and butyrylation are novel post-translational modifications in histones
    Chen, Yue
    Sprung, Robert
    Tang, Yi
    Ball, Haydn
    Sangras, Bhavani
    Kim, Sung Chan
    Falck, John R.
    Peng, Junmin
    Gu, Wei
    Zhao, Yingming
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2007, 6 (05) : 812 - 819
  • [7] Quantitative Acetylome Analysis Reveals the Roles of SIRT1 in Regulating Diverse Substrates and Cellular Pathways
    Chen, Yue
    Zhao, Wenhui
    Yang, Jeong Soo
    Cheng, Zhongyi
    Luo, Hao
    Lu, Zhike
    Tan, Minjia
    Gu, Wei
    Zhao, Yingming
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2012, 11 (10) : 1048 - 1062
  • [8] Covalent histone modifications - miswritten, misinterpreted and mis-erased in human cancers
    Chi, Ping
    Allis, C. David
    Wang, Gang Greg
    [J]. NATURE REVIEWS CANCER, 2010, 10 (07) : 457 - 469
  • [9] Sirt5 Is a NAD-Dependent Protein Lysine Demalonylase and Desuccinylase
    Du, Jintang
    Zhou, Yeyun
    Su, Xiaoyang
    Yu, Jiu Jiu
    Khan, Saba
    Jiang, Hong
    Kim, Jungwoo
    Woo, Jimin
    Kim, Jun Huyn
    Choi, Brian Hyun
    He, Bin
    Chen, Wei
    Zhang, Sheng
    Cerione, Richard A.
    Auwerx, Johan
    Hao, Quan
    Lin, Hening
    [J]. SCIENCE, 2011, 334 (6057) : 806 - 809
  • [10] Eswar Narayanan, 2008, V426, P145, DOI 10.1007/978-1-60327-058-8_8