Conformation of protonated guanine nucleotides via infrared multiphoton dissociation spectroscopy: Observation of rotamers in the anti-conformation

被引:3
作者
Asami, Hiroya [1 ]
Saigusa, Hiroyuki [2 ]
Kohno, Jun-ya [1 ]
机构
[1] Gakushuin Univ, Fac Sci, Dept Chem, Toshima Ku, 1-5-1 Mejiro, Tokyo 1718588, Japan
[2] Yokohama City Univ, Sch Sci, Kanazawa Ku, 22-2 Seto, Yokohama, Kanagawa 2360027, Japan
关键词
Infrared multiphoton dissociation spectroscopy; Nucleotide; IR ablation; Droplet beam; Ab initio calculation; IR-LASER ABLATION; DOUBLE-RESONANCE SPECTROSCOPY; PHOTODISSOCIATION SPECTROSCOPY; DROPLET BEAM; NUCLEOSIDES; GUANOSINE; ROTATION; TRAP; IONS; ACID;
D O I
10.1016/j.cplett.2020.137828
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Guanosine 5'-monophosphate (GMP) is a component in RNA, which functions as a messenger in biological systems. Infrared multiphoton dissociation (IRMPD) spectroscopy, combined with IR-laser ablation of a droplet beam, reveals that the most stable conformer of gas-phase protonated GMP has a keto form and an anti-conformation. This includes two types of rotamers with different orientations of OH groups in the sugar ring. This suggests that our own laser ablation of droplet beam method promotes conformation-selective IRMPD spectroscopy with an effective cooling system in the gas phase.
引用
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页数:4
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共 18 条
  • [1] Rotation of Guanine Amino Groups in G-Quadruplexes: A Probe for Local Structure and Ligand Binding
    Adrian, Michael
    Winnerdy, Fernaldo Richtia
    Heddi, Brahim
    Anh Tuan Phan
    [J]. BIOPHYSICAL JOURNAL, 2017, 113 (04) : 775 - 784
  • [2] [Anonymous], 1984, PRINCIPLES NUCL ACID
  • [3] Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements
    Arai, S
    Chatake, T
    Ohhara, T
    Kurihara, K
    Tanaka, I
    Suzuki, N
    Fujimoto, Z
    Mizuno, H
    Niimura, N
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 (09) : 3017 - 3024
  • [4] Photodissociation spectroscopy of protonated guanosine monophosphate based on IR-laser ablation of droplet beam and quadrupole ion trap mass spectrometry
    Asami, Hiroya
    Kawauchi, Norishi
    Kohno, Jun-ya
    [J]. CHEMICAL PHYSICS LETTERS, 2019, 720 : 119 - 123
  • [5] Photodissociation Spectroscopy of Hydrated Myoglobin Ions Isolated by IR-laser Ablation of a Droplet Beam: Recovery from pH-denatured Structure by Gas-phase Isolation
    Asami, Hiroya
    Kawabata, Rina
    Kawauchi, Norishi
    Kohno, Jun-ya
    [J]. CHEMISTRY LETTERS, 2019, 48 (02) : 140 - 143
  • [6] Effective Strategy for Conformer-Selective Detection of Short-Lived Excited State Species: Application to the IR Spectroscopy of the N1H Keto Tautomer of Guanine
    Asami, Hiroya
    Tokugawa, Munefumi
    Masaki, Yoshiaki
    Ishiuchi, Shun-ichi
    Gloaguen, Eric
    Seio, Kohji
    Saigusa, Hiroyuki
    Fujii, Masaaki
    Sekine, Mitsuo
    Mons, Michel
    [J]. JOURNAL OF PHYSICAL CHEMISTRY A, 2016, 120 (14) : 2179 - 2184
  • [7] Controlling Glycosyl Bond Conformation of Guanine Nucleosides: Stabilization of the anti Conformer in 5′-O-Ethylguanosine
    Asami, Hiroya
    Urashima, Shu-hei
    Tsukamoto, Masaki
    Motoda, Ayaka
    Hayakawa, Yoshihiro
    Saigusa, Hiroyuki
    [J]. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2012, 3 (05): : 571 - 575
  • [8] Structural identification of uric acid and its monohydrates by IR-UV double resonance spectroscopy
    Asami, Hiroya
    Urashima, Shu-hei
    Saigusa, Hiroyuki
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2011, 13 (45) : 20476 - 20480
  • [9] Gas-phase isolation of diethyl guanosine 5′-monophosphate and its conformational assignment
    Asami, Hiroya
    Tsukamoto, Masaki
    Hayakawa, Yoshihiro
    Saigusa, Hiroyuki
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2010, 12 (42) : 13918 - 13921
  • [10] Hydration structures of 2′-deoxyguanosine studied by IR-UV double resonance spectroscopy: comparison with guanosine
    Asami, Hiroya
    Urashima, Shu-hei
    Saigusa, Hiroyuki
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2009, 11 (44) : 10466 - 10472