Association of Polymorphisms at the SIX1-SIX6 Locus With Primary Open-Angle Glaucoma

被引:12
作者
Lu, Shi Yao [1 ]
He, Zong Ze [2 ]
Xu, Jia Xin [3 ]
Yang, Chen [4 ,5 ,6 ]
Chen, Li Jia [1 ]
Gong, Bo [4 ,5 ,6 ,7 ]
机构
[1] Chinese Univ Hong Kong, Dept Ophthalmol & Visual Sci, 147K Argyle St, Hong Kong, Peoples R China
[2] Southwest Med Univ, Dept Neurosurg, Luzhou, Sichuan, Peoples R China
[3] Southwest Med Univ, Sch Clin Med, Luzhou, Sichuan, Peoples R China
[4] Sichuan Acad Med Sci, Key Lab Human Dis Gene Study Sichuan Prov, Chengdu, Sichuan, Peoples R China
[5] Sichuan Acad Med Sci, Dept Lab Med, Chengdu, Sichuan, Peoples R China
[6] Univ Elect Sci & Technol China, Sichuan Prov Peoples Hosp, Sch Med, Chengdu, Sichuan, Peoples R China
[7] Chinese Acad Sci, Inst Chengdu Biol, Sichuan Translat Med Hosp, Chengdu, Sichuan, Peoples R China
关键词
SIX6; POAG; meta-analysis; GENOME-WIDE ASSOCIATION; FIBER LAYER THICKNESS; SUSCEPTIBILITY LOCI; GENETIC-VARIANTS; COMMON VARIANTS; RISK-FACTORS; SINE-OCULIS; SIX6; IDENTIFICATION; MECHANISMS;
D O I
10.1167/iovs.18-26489
中图分类号
R77 [眼科学];
学科分类号
100212 ;
摘要
PURPOSE. To evaluate the association of single-nucleotide polymorphisms (SNPs) in the SIX1-SIX6 locus with primary open-angle glaucoma (POAG) through a systematic review and meta-analysis from 22 studies. METHODS. To our knowledge, all case-control association studies on SNPs in the SIX1-SIX6 locus and POAG reported up to August 30, 2018, in PubMed, Embase, and Web of Science were retrieved. Unadjusted and adjusted odds ratios (ORs) and 95% confidence intervals (95% CIs) for each SNP were calculated using a fixed- or random-effect model according to interstudy heterogeneity. RESULTS. This meta-analysis involved 12 SNPs in SIX1-SIX6 reported in 22 studies. The association of rs10483727 with POAG has been presented in 16 studies involving 14,402 patients and 27,425 controls, whereas rs33912345 has been investigated in 12 studies involving 10,563 patients and 16,740 controls. Meta-analyses revealed significant associations of these two SNPs with POAG in the pooled populations under all genetic models. Stratified analyses by population detected significant association of both SNPs in the East Asian and Caucasian subgroups, but not in South Asian or African subgroups. Among the other SNPs that were reported by up to four cohorts of East Asian and African ancestries, only rs12436579 showed a significant association in the meta-analysis (OR = 0.79, P = 1.08 x 10(-4)). CONCLUSIONS. This meta-analysis confirmed the association of rs10483727 and rs33912345 in SIX1-SIX6 with POAG. The associations of both SNPs were specifically detected in East Asian and Caucasian cohorts, rather than in South Asian and African cohorts, suggesting an ethnic difference. SNP rs12436579 is a candidate variant for the disease that awaits validation in other populations.
引用
收藏
页码:2914 / 2924
页数:11
相关论文
共 59 条
  • [41] Adult-onset primary open-angle glaucoma caused by mutations in optineurin
    Rezaie, T
    Child, A
    Hitchings, R
    Brice, G
    Miller, L
    Coca-Prados, M
    Héon, E
    Krupin, T
    Ritch, R
    Kreutzer, D
    Crick, RP
    Sarfarazi, M
    [J]. SCIENCE, 2002, 295 (5557) : 1077 - 1079
  • [42] Association of the SIX6 locus with primary open angle glaucoma in southern Chinese and Japanese
    Rong, Shi Song
    Lu, Shi Yao
    Matsushita, Kenji
    Huang, Chukai
    Leung, Christopher K. S.
    Kawashima, Rumi
    Usui, Shinichi
    Tam, Pancy O. S.
    Young, Alvin L.
    Tsujikawa, Motokazu
    Zhang, Mingzhi
    Nishida, Kohji
    Wiggs, Janey L.
    Tham, Clement C.
    Pang, Chi Pui
    Chen, Li Jia
    [J]. EXPERIMENTAL EYE RESEARCH, 2019, 180 : 129 - 136
  • [43] Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans
    Salinas, Yasmmyn D.
    Wang, Leyao
    Dewan, Andrew T.
    [J]. BMC GENETICS, 2016, 17
  • [44] Association of three single nucleotide polymorphisms at the SIX1-SIX6 locus with primary open angle glaucoma in the Chinese population
    Sang, Jinghong
    Jia, Liyun
    Zhao, Bowen
    Wang, Huaizhou
    Zhang, Nihong
    Wang, Ningli
    [J]. SCIENCE CHINA-LIFE SCIENCES, 2016, 59 (07) : 694 - 699
  • [45] Identification and characterization of variants and a novel 4bp deletion in the regulatory region of SIX6, a risk factor for primary open-angle glaucoma
    Shah, Mohd Hussain
    Tabanera, Noemi
    Krishnadas, Subbaiah Ramasamy
    Pillai, Manju R.
    Bovolenta, Paola
    Sundaresan, Periasamy
    [J]. MOLECULAR GENETICS & GENOMIC MEDICINE, 2017, 5 (04): : 323 - 335
  • [46] Genome-wide association study identifies seven novel susceptibility loci for primary open-angle glaucoma
    Shiga, Yukihiro
    Akiyama, Masato
    Nishiguchi, Koji M.
    Sato, Kota
    Shimozawa, Nobuhiro
    Takahashi, Atsushi
    Momozawa, Yukihide
    Hirata, Makoto
    Matsuda, Koichi
    Yamaji, Taiki
    Iwasaki, Motoki
    Tsugane, Shoichiro
    Oze, Isao
    Mikami, Haruo
    Naito, Mariko
    Wakai, Kenji
    Yoshikawa, Munemitsu
    Miyake, Masahiro
    Yamashiro, Kenji
    Kashiwagi, Kenji
    Iwata, Takeshi
    Mabuchi, Fumihiko
    Takamoto, Mitsuko
    Ozaki, Mineo
    Kawase, Kazuhide
    Aihara, Makoto
    Araie, Makoto
    Yamamoto, Tetsuya
    Kiuchi, Yoshiaki
    Nakamura, Makoto
    Ikeda, Yasuhiro
    Sonoda, Koh-Hei
    Ishibashi, Tatsuro
    Nitta, Koji
    Iwase, Aiko
    Shirato, Shiroaki
    Oka, Yoshitaka
    Satoh, Mamoru
    Sasaki, Makoto
    Fuse, Nobuo
    Suzuki, Yoichi
    Cheng, Ching-Yu
    Khor, Chiea Chuen
    Baskaran, Mani
    Perera, Shamira
    Aung, Tin
    Vithana, Eranga N.
    Bailey, Jessica N. Cooke
    Kang, Jae H.
    Pasquale, Louis R.
    [J]. HUMAN MOLECULAR GENETICS, 2018, 27 (08) : 1486 - 1496
  • [47] Genetic analysis of Japanese primary open-angle glaucoma patients and clinical characterization of risk alleles near CDKN2B-AS1, SIX6 and GAS7
    Shiga, Yukihiro
    Nishiguchi, Koji M.
    Kawai, Yosuke
    Kojima, Kaname
    Sato, Kota
    Fujita, Kosuke
    Takahashi, Mai
    Omodaka, Kazuko
    Araie, Makoto
    Kashiwagi, Kenji
    Aihara, Makoto
    Iwata, Takeshi
    Mabuchi, Fumihiko
    Takamoto, Mitsuko
    Ozaki, Mineo
    Kawase, Kazuhide
    Fuse, Nobuo
    Yamamoto, Masayuki
    Yasuda, Jun
    Nagasaki, Masao
    Nakazawa, Toru
    [J]. PLOS ONE, 2017, 12 (12):
  • [48] P16INK4a Upregulation Mediated by SIX6 Defines Retinal Ganglion Cell Pathogenesis in Glaucoma
    Skowronska-Krawczyk, Dorota
    Zhao, Ling
    Zhu, Jie
    Weinreb, Robert N.
    Cao, Guiqun
    Luo, Jing
    Flagg, Ken
    Patel, Sherrina
    Wen, Cindy
    Krupa, Martin
    Luo, Hongrong
    Ouyang, Hong
    Lin, Danni
    Wang, Wenqiu
    Li, Gen
    Xu, Yanxin
    Li, Oulan
    Chung, Christopher
    Yeh, Emily
    Jafari, Maryam
    Ai, Michael
    Zhong, Zheng
    Shi, William
    Zheng, Lianghong
    Krawczyk, Michal
    Chen, Daniel
    Shi, Catherine
    Zin, Carolyn
    Zhu, Jin
    Mellon, Pamela L.
    Gao, Weiwei
    Abagyan, Ruben
    Zhang, Liangfang
    Sun, Xiaodong
    Zhong, Sheng
    Zhuo, Yehong
    Rosenfeld, Michael G.
    Liu, Yizhi
    Zhang, Kang
    [J]. MOLECULAR CELL, 2015, 59 (06) : 931 - 940
  • [49] New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics
    Springelkamp, Henriet
    Iglesias, Adriana I.
    Mishra, Aniket
    Hoehn, Rene
    Wojciechowski, Robert
    Khawaja, Anthony P.
    Nag, Abhishek
    Wang, Ya Xing
    Wang, Jie Jin
    Cuellar-Partida, Gabriel
    Gibson, Jane
    Bailey, Jessica N. Cooke
    Vithana, Eranga N.
    Gharahkhani, Puya
    Boutin, Thibaud
    Ramdas, Wishal D.
    Zeller, Tanja
    Luben, Robert N.
    Yonova-Doing, Ekaterina
    Viswanathan, Ananth C.
    Yazar, Seyhan
    Cree, Angela J.
    Haines, Jonathan L.
    Koh, Jia Yu
    Souzeau, Emmanuelle
    Wilson, James F.
    Amin, Najaf
    Mueller, Christian
    Venturini, Cristina
    Kearns, Lisa S.
    Kang, Jae Hee
    Tham, Yih Chung
    Zhou, Tiger
    van Leeuwen, Elisabeth M.
    Nickels, Stefan
    Sanfilippo, Paul
    Liao, Jiemin
    van der Linde, Herma
    Zhao, Wanting
    van Koolwijk, Leonieke M. E.
    Zheng, Li
    Rivadeneira, Fernando
    Baskaran, Mani
    van der Lee, Sven J.
    Perera, Shamira
    de Jong, Paulus T. V. M.
    Oostra, Ben A.
    Uitterlinden, Andre G.
    Fan, Qiao
    Hofman, Albert
    [J]. HUMAN MOLECULAR GENETICS, 2017, 26 (02) : 438 - 453
  • [50] Identification of a gene that causes primary open angle glaucoma
    Stone, EM
    Fingert, JH
    Alward, WLM
    Nguyen, TD
    Polansky, JR
    Sunden, SLF
    Nishimura, D
    Clark, AF
    Nystuen, A
    Nichols, BE
    Mackey, DA
    Ritch, R
    Kalenak, JW
    Craven, ER
    Sheffield, VC
    [J]. SCIENCE, 1997, 275 (5300) : 668 - 670