Integrated Analysis of Seaweed Components during Seasonal Fluctuation by Data Mining Across Heterogeneous Chemical Measurements with Network Visualization
被引:40
作者:
Ito, Kengo
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Yokohama City Univ, Grad Sch Med Life Sci, Tsurumi Ku, Yokohama, Kanagawa 2300045, JapanYokohama City Univ, Grad Sch Med Life Sci, Tsurumi Ku, Yokohama, Kanagawa 2300045, Japan
Ito, Kengo
[1
]
Sakata, Kenji
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机构:
RIKEN, Ctr Sustainable Resource Sci, Tsurumi Ku, Yokohama, Kanagawa 2300045, JapanYokohama City Univ, Grad Sch Med Life Sci, Tsurumi Ku, Yokohama, Kanagawa 2300045, Japan
Sakata, Kenji
[2
]
论文数: 引用数:
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机构:
Date, Yasuhiro
[1
,2
]
Kikuchi, Jun
论文数: 0引用数: 0
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机构:
Yokohama City Univ, Grad Sch Med Life Sci, Tsurumi Ku, Yokohama, Kanagawa 2300045, Japan
RIKEN, Ctr Sustainable Resource Sci, Tsurumi Ku, Yokohama, Kanagawa 2300045, Japan
RIKEN Res Cluster Innovat, Biomass Engn Res Program, Wako, Saitama 3510198, Japan
Nagoya Univ, Grad Sch Bioagr Sci, Chikusa Ku, Nagoya, Aichi 4648601, Japan
Nagoya Univ, Sch Agr Sci, Chikusa Ku, Nagoya, Aichi 4648601, JapanYokohama City Univ, Grad Sch Med Life Sci, Tsurumi Ku, Yokohama, Kanagawa 2300045, Japan
Kikuchi, Jun
[1
,2
,3
,4
,5
]
机构:
[1] Yokohama City Univ, Grad Sch Med Life Sci, Tsurumi Ku, Yokohama, Kanagawa 2300045, Japan
[2] RIKEN, Ctr Sustainable Resource Sci, Tsurumi Ku, Yokohama, Kanagawa 2300045, Japan
[3] RIKEN Res Cluster Innovat, Biomass Engn Res Program, Wako, Saitama 3510198, Japan
[4] Nagoya Univ, Grad Sch Bioagr Sci, Chikusa Ku, Nagoya, Aichi 4648601, Japan
[5] Nagoya Univ, Sch Agr Sci, Chikusa Ku, Nagoya, Aichi 4648601, Japan
Biological information is intricately intertwined with several factors. Therefore, comprehensive analytical methods such as integrated data analysis, combining several data measurements, are required. In this study, we describe a method of data preprocessing that can perform comprehensively integrated analysis based on a variety of multimeasurement of organic and inorganic chemical data from Sargassum fusiforme and explore the concealed biological information by statistical analyses with integrated data. Chemical components including polar and semipolar metabolites, minerals, major elemental and isotopic ratio, and thermal decompositional data were measured as environmentally responsive biological data in the seasonal variation. The obtained spectral data of complex chemical components were preprocessed to isolate pure peaks by removing noise and separating overlapping signals using the multivariate curve resolution alternating least-squares method before integrated analyses. By the input of these preprocessed multimeasurement chemical data, principal component analysis and self-organizing maps of integrated data showed changes in the chemical compositions during the mature stage and identified trends in seasonal variation. Correlation network analysis revealed multiple relationships between organic and inorganic components. Moreover, in terms of the relationship between metal group and metabolites, the results of structural equation modeling suggest that the structure of alginic acid changes during the growth of S. fusiforme, which affects its metal binding ability. This integrated analytical approach using a variety of chemical data can be developed for practical applications to obtain new biochemical knowledge including genetic and environmental information.
机构:
Imperial Residence, Chiyoda Ku, Tokyo 1000001, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Akihito
Fumihito, Akishinonomiya
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机构:
Grad Univ Adv Studies SOKENDAI, Kanagawa 2400193, Japan
Univ Tokyo, Univ Museum, Bunkyo Ku, Tokyo 1130033, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Fumihito, Akishinonomiya
Ikeda, Yuji
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机构:
Imperial Household Agcy, Chiyoda Ku, Tokyo 1008111, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Ikeda, Yuji
Aizawa, Masahiro
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机构:
Imperial Household Agcy, Chiyoda Ku, Tokyo 1008111, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
机构:
Kyoto Univ, Field Sci Educ & Res Ctr, Maizuru Fisheries Res Stn, Maizuru 6250086, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Kai, Yoshiaki
Nishimoto, Yuriko
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机构:
Grad Univ Adv Studies SOKENDAI, Kanagawa 2400193, Japan
Res Inst Evolutionary Biol, Setagaya Ku, Tokyo 1580098, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Nishimoto, Yuriko
Hasegawa, Masami
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机构:
Natl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Natl Inst Genet, DDBJ, Mishima, Shizuoka 4118540, Japan
Grad Univ Adv Studies SOKENDAI, Kanagawa 2400193, Japan
Inst Stat Math, Minato Ku, Tokyo 1068569, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
机构:
Imperial Residence, Chiyoda Ku, Tokyo 1000001, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Akihito
Fumihito, Akishinonomiya
论文数: 0引用数: 0
h-index: 0
机构:
Grad Univ Adv Studies SOKENDAI, Kanagawa 2400193, Japan
Univ Tokyo, Univ Museum, Bunkyo Ku, Tokyo 1130033, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Fumihito, Akishinonomiya
Ikeda, Yuji
论文数: 0引用数: 0
h-index: 0
机构:
Imperial Household Agcy, Chiyoda Ku, Tokyo 1008111, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Ikeda, Yuji
Aizawa, Masahiro
论文数: 0引用数: 0
h-index: 0
机构:
Imperial Household Agcy, Chiyoda Ku, Tokyo 1008111, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
机构:
Kyoto Univ, Field Sci Educ & Res Ctr, Maizuru Fisheries Res Stn, Maizuru 6250086, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Kai, Yoshiaki
Nishimoto, Yuriko
论文数: 0引用数: 0
h-index: 0
机构:
Grad Univ Adv Studies SOKENDAI, Kanagawa 2400193, Japan
Res Inst Evolutionary Biol, Setagaya Ku, Tokyo 1580098, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Nishimoto, Yuriko
Hasegawa, Masami
论文数: 0引用数: 0
h-index: 0
机构:
Natl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
Natl Inst Genet, DDBJ, Mishima, Shizuoka 4118540, Japan
Grad Univ Adv Studies SOKENDAI, Kanagawa 2400193, Japan
Inst Stat Math, Minato Ku, Tokyo 1068569, JapanNatl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan