Recent PELE Developments and Applications in Drug Discovery Campaigns

被引:0
作者
Puch-Giner, Ignasi [1 ]
Molina, Alexis [2 ]
Municoy, Marti [1 ,2 ]
Perez, Carles [2 ]
Guallar, Victor [1 ,2 ]
机构
[1] Barcelona Supercomp Ctr, Pl Eusebi Guell 1-3, Barcelona 08034, Spain
[2] Nostrum Biodiscovery SL, Av Josep Tarradellas 8-10,3-2, Barcelona 08029, Spain
关键词
PELE; molecular modelling; virtual screening; machine learning; drug design; CADD; HIV-1; REVERSE-TRANSCRIPTASE; MONTE-CARLO; ACCURATE DOCKING; PROTEIN; PREDICTION; INHIBITOR; GLIDE; MODEL; FIELD;
D O I
10.3390/ijms232416090
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Computer simulation techniques are gaining a central role in molecular pharmacology. Due to several factors, including the significant improvements of traditional molecular modelling, the irruption of machine learning methods, the massive data generation, or the unlimited computational resources through cloud computing, the future of pharmacology seems to go hand in hand with in silico predictions. In this review, we summarize our recent efforts in such a direction, centered on the unconventional Monte Carlo PELE software and on its coupling with machine learning techniques. We also provide new data on combining two recent new techniques, aquaPELE capable of exhaustive water sampling and fragPELE, for fragment growing.
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页数:12
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