Phytophthora Database 2.0: Update and Future Direction

被引：14

作者：

Park, Bongsoo ^{[1
]}

Martin, Frank ^{[3
]}

Geiser, David M. ^{[1
,2
]}

Kim, Hye-Seon ^{[2
]}

Mansfield, Michele A. ^{[2
]}

Nikolaeva, Ekaterina ^{[2
]}

Park, Sook-Young ^{[2
]}

Coffey, Michael D. ^{[4
]}

Russo, Joseph ^{[5
]}

Kim, Seong H. ^{[6
]}

Balci, Yilmaz ^{[7
]}

Abad, Gloria ^{[8
]}

Burgess, Treena ^{[9
]}

Gruenwald, Niklaus J. ^{[10
]}

Cheong, Kyeongchae ^{[11
,12
]}

Choi, Jaeyoung ^{[11
,12
]}

Lee, Yong-Hwan ^{[11
,12
]}

Kang, Seogchan ^{[1
,2
]}

机构：

[1] Penn State Univ, Integrat Biosci Grad Program Bioinformat & Genom, University Pk, PA 16802 USA

[2] Penn State Univ, Dept Plant Pathol & Environm Microbiol, University Pk, PA 16802 USA

[3] USDA ARS, Crop Improvement & Protect Res Unit, Salinas, CA 93906 USA

[4] Univ Calif Riverside, Dept Plant Pathol & Microbiol, Riverside, CA 92521 USA

[5] ZedX Inc, Bellefonte, PA 16823 USA

[6] Penn Dept Agr, Harrisburg, PA 17110 USA

[7] Univ Maryland, Dept Plant Sci & Landscape Architecture, College Pk, MD 20742 USA

[8] USDA APHIS PPQ, Beltsville, MD 20705 USA

[9] Murdoch Univ, Ctr Phytophthora Sci & Management, Murdoch, WA 6150, Australia

[10] USDA ARS, Hort Crops Res Lab, Corvallis, OR 97330 USA

[11] Seoul Natl Univ, Dept Agr Biotechnol, Seoul 151921, South Korea

[12] Seoul Natl Univ, Ctr Fungal Pathogenesis, Seoul 151921, South Korea

来源：

PHYTOPATHOLOGY | 2013年 / 103卷 / 12期

基金：

新加坡国家研究基金会;

关键词：

culture collection; database; invasive pathogen; molecular diagnosis; population biology; systematics; MICROSATELLITE MARKERS; RAMORUM; IDENTIFICATION; MIGRATION; LINEAGES; AMERICA; FUNGI;

D O I：

10.1094/PHYTO-01-13-0023-R

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

The online community resource Phytophthora database (PD) was developed to support accurate and rapid identification of Phytophthora and to help characterize and catalog the diversity and evolutionary relationships within the genus. Since its release in 2008, the sequence database has grown to cover 1 to 12 loci for approximate to 2,600 isolates (representing 138 described and provisional species). Sequences of multiple mitochondrial loci were added to complement nuclear loci-based phylogenetic analyses and diagnostic tool development. Key characteristics of most newly described and provisional species have been summarized. Other additions to improve the PD functionality include: (i) geographic information system tools that enable users to visualize the geographic origins of chosen isolates on a global-scale map, (ii) a tool for comparing genetic similarity between isolates via microsatellite markers to support population genetic studies, (iii) a comprehensive review of molecular diagnostics tools and relevant references, (iv) sequence alignments used to develop polymerase chain reaction-based diagnostics tools to support their utilization and new diagnostic tool development, and (v) an online community forum for sharing and preserving experience and knowledge accumulated in the global Phytophthora community. Here we present how these improvements can support users and discuss the PD's future direction.

引用

页码：1204 / 1208

页数：5

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