Genome-Wide Analysis of Chemosensory Protein Genes (CSPs) Family in Fig Wasps (Hymenoptera, Chalcidoidea)

被引:5
作者
Xin, Zhaozhe [1 ]
Huang, Dawei [1 ]
Zhao, Dan [1 ]
Li, Jiaxing [1 ]
Wei, Xianqin [1 ]
Xiao, Jinhua [1 ]
机构
[1] Nankai Univ, Coll Life Sci, Inst Entomol, Tianjin 300071, Peoples R China
基金
中国国家自然科学基金;
关键词
chemosensory proteins; fig wasps; whole-genome level; ODORANT-BINDING PROTEINS; CODON USAGE BIAS; EVOLUTIONARY HISTORY; PHEROMONE DETECTION; SELECTION; INSIGHTS; INSECTS; ADAPTATION; DUPLICATION; VERTEBRATES;
D O I
10.3390/genes11101149
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Chemosensory proteins (CSP) are a class of acidic soluble proteins which have various functions in chemoreception, resistance and immunity, but we still have very little knowledge on this gene family in fig wasps, a peculiar insects group (Hymenoptera, Chalcidoidea) that shelter in the fig syconia of Ficus trees. Here, we made the first comprehensive analysis of CSP gene family in the 11 fig wasps at whole-genome level. We manually annotated 104 CSP genes in the genomes of the 11 fig wasps, comprehensively analyzed them in gene characteristics, conserved cysteine patterns, motif orders, phylogeny, genome distribution, gene tandem duplication, and expansion and contraction patterns of the gene family. We also approximately predicted the gene expression by codon adaptation index analysis. Our study shows that the CSP gene family is conserved in the 11 fig wasps; the CSP gene numbers in pollinating fig wasps are less than in non-pollinating fig wasps, which may be due to their longer history of adaptation to fig syconia; the expansion of CSP gene in two non-pollinating fig wasps, Philotrypesis tridentata and Sycophaga agraensis, may be a species-specific phenomenon. These results provide us with useful information for understanding the evolution of the CSP gene family of insects in diverse living environments.
引用
收藏
页码:1 / 16
页数:16
相关论文
共 62 条
[1]   ProtTest: selection of best-fit models of protein evolution [J].
Abascal, F ;
Zardoya, R ;
Posada, D .
BIOINFORMATICS, 2005, 21 (09) :2104-2105
[2]   MEME SUITE: tools for motif discovery and searching [J].
Bailey, Timothy L. ;
Boden, Mikael ;
Buske, Fabian A. ;
Frith, Martin ;
Grant, Charles E. ;
Clementi, Luca ;
Ren, Jingyuan ;
Li, Wilfred W. ;
Noble, William S. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :W202-W208
[3]   Unusual codon usage bias in low expression genes of Vibrio cholerae [J].
Basak, Surajit ;
Mukherjee, Indranuj ;
Choudhury, Mayukh ;
Das, Santasabuj .
BIOINFORMATION, 2008, 3 (05) :213-217
[4]   The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana [J].
Cannon S.B. ;
Mitra A. ;
Baumgarten A. ;
Young N.D. ;
May G. .
BMC Plant Biology, 4 (1)
[5]   TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data [J].
Chen, Chengjie ;
Chen, Hao ;
Zhang, Yi ;
Thomas, Hannah R. ;
Frank, Margaret H. ;
He, Yehua ;
Xia, Rui .
MOLECULAR PLANT, 2020, 13 (08) :1194-1202
[6]  
Cook J.M., 2005, ECOLOGY, V83, P110
[7]   Odorant-Binding Proteins and Chemosensory Proteins in Pheromone Detection and Release in the Silkmoth Bombyx mori [J].
Dani, Francesca R. ;
Michelucci, Elena ;
Francese, Simona ;
Mastrobuoni, Guido ;
Cappellozza, Silvia ;
La Marca, Giancarlo ;
Niccolini, Alberto ;
Felicioli, Antonio ;
Moneti, Gloriano ;
Pelosi, Paolo .
CHEMICAL SENSES, 2011, 36 (04) :335-344
[8]   CAFE: a computational tool for the study of gene family evolution [J].
De Bie, T ;
Cristianini, N ;
Demuth, JP ;
Hahn, MW .
BIOINFORMATICS, 2006, 22 (10) :1269-1271
[9]   Tissue-specific transcriptomics, chromosomal localization, and phylogeny of chemosensory and odorant binding proteins from the red flour beetle Tribolium castaneum reveal subgroup specificities for olfaction or more general functions [J].
Dippel, Stefan ;
Oberhofer, Georg ;
Kahnt, Joerg ;
Gerischer, Lizzy ;
Opitz, Lennart ;
Schachtner, Joachim ;
Stanke, Mario ;
Schuetz, Stefan ;
Wimmer, Ernst A. ;
Angeli, Sergio .
BMC GENOMICS, 2014, 15
[10]   Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda [J].
Eyun, Seong-il ;
Soh, Ho Young ;
Posavi, Marijan ;
Munro, James B. ;
Hughes, Daniel S. T. ;
Murali, Shwetha C. ;
Qu, Jiaxin ;
Dugan, Shannon ;
Lee, Sandra L. ;
Chao, Hsu ;
Dinh, Huyen ;
Han, Yi ;
Doddapaneni, HarshaVardhan ;
Worley, Kim C. ;
Muzny, Donna M. ;
Park, Eun-Ok ;
Silva, Joana C. ;
Gibbs, Richard A. ;
Richards, Stephen ;
Lee, Carol Eunmi .
MOLECULAR BIOLOGY AND EVOLUTION, 2017, 34 (08) :1838-1862