A framework for execution of computational chemistry codes in grid environments

被引:0
作者
Pereira Gomes, Andre Severo
Merzky, Andre
Visscher, Lucas
机构
[1] Vrije Univ Amsterdam, Fac Exact Sci, Dept Theoret Chem, NL-1081 HV Amsterdam, Netherlands
[2] Free Univ Amsterdam, Fac Exact Sci, Dept Comp Sci, NL-1081 HV Amsterdam, Netherlands
来源
COMPUTATIONAL SCIENCE - ICCS 2006, PT 3, PROCEEDINGS | 2006年 / 3993卷
关键词
grid computing; computational chemistry; grid(lab) application toolkit; heterogeneous environment; command-line interface;
D O I
暂无
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
Grid computing is a promising technology for computational chemistry, due to the large volume of calculations involved in appplications such as molecular modeling, thermochemistry and other types of systematic studies. Difficulties in using computational chemistry codes in grid environments arise, however, from the fact that the application software is complex, requiring substantial effort to be installed on different platforms. Morever, these codes depend upon task-dependent sets of data files to be present at the execution nodes. Aiming to improve the usability of different quantum chemistry codes in the distributed, heterogeneous environments found in computational grids, we describe a framework capable of handling the execution of different codes on different platforms. This framework can be divided into three independent parts, one dealing with the mapping of a calculation to a set of codes and the construction of execution environments, one dealing with the management of grid resources, and one that takes care of the heterogeneity of the environment. The suitability of this framework to tackle typical quantum chemistry calculations is discussed and illustrated by a model application.
引用
收藏
页码:97 / 104
页数:8
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