TET enzymes, DNA demethylation and pluripotency

被引:65
作者
Ross, Samuel E. [1 ,2 ]
Bogdanovic, Ozren [1 ,3 ]
机构
[1] Garvan Inst Med Res, Genom & Epigenet Div, Sydney, NSW 2010, Australia
[2] Univ New South Wales, Fac Med, St Vincents Clin Sch, Sydney, NSW 2010, Australia
[3] Univ New South Wales, Sch Biotechnol & Biomol Sci, Sydney, NSW 2052, Australia
基金
澳大利亚研究理事会; 澳大利亚国家健康与医学研究理事会;
关键词
METHYLCYTOSINE OXIDASES TET1; CELL SELF-RENEWAL; ENHANCER ACTIVITY; ACTIVE-DEMETHYLATION; NAIVE PLURIPOTENCY; GROUND-STATE; CXXC DOMAIN; MOUSE; METHYLATION; PROTEINS;
D O I
10.1042/BST20180606
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ten-eleven translocation (TET) methylcytosine dioxygenases (TET1, TET2, TET3) actively cause demethylation of 5-methylcytosine (5mC) and produce and safeguard hypomethylation at key regulatory regions across the genome. This 5mC erasure is particularly important in pluripotent embryonic stem cells (ESCs) as they need to maintain self-renewal capabilities while retaining the potential to generate different cell types with diverse 5mC patterns. In this review, we discuss the multiple roles of TET proteins in mouse ESCs, and other vertebrate model systems, with a particular focus on TET functions in pluripotency, differentiation, and developmental DNA methylome reprogramming. Furthermore, we elaborate on the recently described non-catalytic roles of TET proteins in diverse biological contexts. Overall, TET proteins are multifunctional regulators that through both their catalytic and non-catalytic roles carry out myriad functions linked to early developmental processes.
引用
收藏
页码:875 / 885
页数:11
相关论文
共 81 条
[1]   Molecular Evolution of the TET Gene Family in Mammals [J].
Akahori, Hiromichi ;
Guindon, Stephane ;
Yoshizaki, Sumio ;
Muto, Yoshinori .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2015, 16 (12) :28472-28485
[2]   5-hydroxymethyl-cytosine enrichment of non-committed cells is not a universal feature of vertebrate development [J].
Almeida, Rimple D. ;
Loose, Matthew ;
Sottile, Virginie ;
Matsa, Elena ;
Denning, Chris ;
Young, Lorraine ;
Johnson, Andrew D. ;
Gering, Martin ;
Ruzov, Alexey .
EPIGENETICS, 2012, 7 (04) :383-389
[3]   De novo DNA methylation drives 5hmC accumulation in mouse zygotes [J].
Amouroux, Rachel ;
Nashun, Buhe ;
Shirane, Kenjiro ;
Nakagawa, Shoma ;
Hill, Peter W. S. ;
D'Souza, Zelpha ;
Nakayama, Manabu ;
Matsuda, Masashi ;
Turp, Aleksandra ;
Ndjetehe, Elodie ;
Encheva, Vesela ;
Kudo, Nobuaki R. ;
Koseki, Haruhiko ;
Sasaki, Hiroyiki ;
Hajkova, Petra .
NATURE CELL BIOLOGY, 2016, 18 (02) :225-+
[4]   Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells [J].
Blaschke, Kathryn ;
Ebata, Kevin T. ;
Karimi, Mohammad M. ;
Zepeda-Martinez, Jorge A. ;
Goyal, Preeti ;
Mahapatra, Sahasransu ;
Tam, Angela ;
Laird, Diana J. ;
Hirst, Martin ;
Rao, Anjana ;
Lorincz, Matthew C. ;
Ramalho-Santos, Miguel .
NATURE, 2013, 500 (7461) :222-+
[5]   Active DNA demethylation at enhancers during the vertebrate phylotypic period [J].
Bogdanovic, Ozren ;
Smits, Arne H. ;
de la Calle Mustienes, Elisa ;
Tena, Juan J. ;
Ford, Ethan ;
Williams, Ruth ;
Senanayake, Upeka ;
Schultz, Matthew D. ;
Hontelez, Saartje ;
van Kruijsbergen, Ila ;
Rayon, Teresa ;
Gnerlich, Felix ;
Carell, Thomas ;
Veenstra, Gert Jan C. ;
Manzanares, Miguel ;
Sauka-Spengler, Tatjana ;
Ecker, Joseph R. ;
Vermeulen, Michiel ;
Luis Gomez-Skarmeta, Jose ;
Lister, Ryan .
NATURE GENETICS, 2016, 48 (04) :417-+
[6]   Vitamin C modulates TET1 function during somatic cell reprogramming [J].
Chen, Jiekai ;
Guo, Lin ;
Zhang, Lei ;
Wu, Haoyu ;
Yang, Jiaqi ;
Liu, He ;
Wang, Xiaoshan ;
Hu, Xiao ;
Gu, Tianpeng ;
Zhou, Zhiwei ;
Liu, Jing ;
Liu, Jiadong ;
Wu, Hongling ;
Mao, Shi-Qing ;
Mo, Kunlun ;
Li, Yingying ;
Lai, Keyu ;
Qi, Jing ;
Yao, Hongjie ;
Pan, Guangjin ;
Xu, Guo-Liang ;
Pei, Duanqing .
NATURE GENETICS, 2013, 45 (12) :1504-U140
[7]   TET2 promotes histone O-GlcNAcylation during gene transcription [J].
Chen, Qiang ;
Chen, Yibin ;
Bian, Chunjing ;
Fujiki, Ryoji ;
Yu, Xiaochun .
NATURE, 2013, 493 (7433) :561-+
[8]   TET Family Proteins and Their Role in Stem Cell Differentiation and Transformation [J].
Cimmino, Luisa ;
Abdel-Wahab, Omar ;
Levine, Ross L. ;
Aifantis, Iannis .
CELL STEM CELL, 2011, 9 (03) :193-204
[9]   NANOG-dependent function of TET1 and TET2 in establishment of pluripotency [J].
Costa, Yael ;
Ding, Junjun ;
Theunissen, Thorold W. ;
Faiola, Francesco ;
Hore, Timothy A. ;
Shliaha, Pavel V. ;
Fidalgo, Miguel ;
Saunders, Arven ;
Lawrence, Moyra ;
Dietmann, Sabine ;
Das, Satyabrata ;
Levasseur, Dana N. ;
Li, Zhe ;
Xu, Mingjiang ;
Reik, Wolf ;
Silva, Jose C. R. ;
Wang, Jianlong .
NATURE, 2013, 495 (7441) :370-374
[10]   TET-mediated DNA demethylation controls gastrulation by regulating Lefty-Nodal signalling [J].
Dai, Hai-Qiang ;
Wang, Bang-An ;
Yang, Lu ;
Chen, Jia-Jia ;
Zhu, Guo-Chun ;
Sun, Mei-Ling ;
Ge, Hao ;
Wang, Rui ;
Hapman, Deborah L. C. ;
Tang, Fuchou ;
Sun, Xin ;
Xu, Guo-Liang .
NATURE, 2016, 538 (7626) :528-+