Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data

被引：87

作者：

Baerends, RJS ^{[1
]}

Smits, WK ^{[1
]}

de Jong, A ^{[1
]}

Hameon, LW ^{[1
]}

Kok, J ^{[1
]}

Kuipers, OP ^{[1
]}

机构：

[1] Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, NL-9751 NN Haren, Netherlands

来源：

GENOME BIOLOGY | 2004年 / 5卷 / 05期

关键词：

D O I：

10.1186/gb-2004-5-5-r37

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Genome2D is a Windows-based software tool for visualization of bacterial transcriptome and customized datasets on linear chromosome maps constructed from annotated genome sequences. Genome2D facilitates the analysis of transcriptome data by using different color ranges to depict differences in gene-expression levels on a genome map. Such output format enables visual inspection of the transcriptome data, and will quickly reveal transcriptional units, without prior knowledge of expression level cutoff values. The compiled version of Genome2D is freely available for academic or non-profit use from http://molgen.biol.rug.nl/molgen/research/molgensoftware.php.

引用

页数：6

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