Graphics processing units accelerated semiclassical initial value representation molecular dynamics

被引:30
作者
Tamascelli, Dario [1 ]
Dambrosio, Francesco Saverio [1 ]
Conte, Riccardo [2 ,3 ]
Ceotto, Michele [4 ]
机构
[1] Univ Milan, Dipartimento Fis, I-20133 Milan, Italy
[2] Emory Univ, Dept Chem, Atlanta, GA 30322 USA
[3] Emory Univ, Cherry L Emerson Ctr Sci Computat, Atlanta, GA 30322 USA
[4] Univ Milan, Dipartimento Chim, I-20133 Milan, Italy
关键词
DENSITY-FUNCTIONAL THEORY; QUANTUM REACTIVE SCATTERING; VALUE SERIES REPRESENTATION; VIBRATIONAL-ENERGY LEVELS; QUARTIC FORCE-FIELD; CLASSICAL S-MATRIX; ELECTRONIC-STRUCTURE; CHEMISTRY CALCULATIONS; INTEGRAL EVALUATION; CHARGE-TRANSFER;
D O I
10.1063/1.4873137
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
This paper presents a Graphics Processing Units (GPUs) implementation of the Semiclassical Initial Value Representation (SC-IVR) propagator for vibrational molecular spectroscopy calculations. The time-averaging formulation of the SC-IVR for power spectrum calculations is employed. Details about the GPU implementation of the semiclassical code are provided. Four molecules with an increasing number of atoms are considered and the GPU-calculated vibrational frequencies perfectly match the benchmark values. The computational time scaling of two GPUs (NVIDIA Tesla C2075 and Kepler K20), respectively, versus two CPUs (Intel Core i5 and Intel Xeon E5-2687W) and the critical issues related to the GPU implementation are discussed. The resulting reduction in computational time and power consumption is significant and semiclassical GPU calculations are shown to be environment friendly. (C) 2014 AIP Publishing LLC.
引用
收藏
页数:10
相关论文
共 97 条
[1]  
Andrade X., 2012, LECTURE NOTES IN PHY, V837, P401
[2]   Real-Space Density Functional Theory on Graphical Processing Units: Computational Approach and Comparison to Gaussian Basis Set Methods [J].
Andrade, Xavier ;
Aspuru-Guzik, Alan .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2013, 9 (10) :4360-4373
[3]   Time-dependent density-functional theory in massively parallel computer architectures: the OCTOPUS project [J].
Andrade, Xavier ;
Alberdi-Rodriguez, Joseba ;
Strubbe, David A. ;
Oliveira, Micael J. T. ;
Nogueira, Fernando ;
Castro, Alberto ;
Muguerza, Javier ;
Arruabarrena, Agustin ;
Louie, Steven G. ;
Aspuru-Guzik, Alan ;
Rubio, Angel ;
Marques, Miguel A. L. .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2012, 24 (23)
[4]  
[Anonymous], 1965, QUANTUM MECHANICS AN
[5]  
Baraglia R, 2011, LECT NOTES COMPUT SC, V6784, P412
[6]   SEMICLASSICAL APPROXIMATIONS IN WAVE MECHANICS [J].
BERRY, MV ;
MOUNT, KE .
REPORTS ON PROGRESS IN PHYSICS, 1972, 35 (04) :315-+
[7]   EXACT VIBRATIONAL ENERGIES OF NON-ROTATING H2O AND D2O USING AN ACCURATE ABINITIO POTENTIAL [J].
BOWMAN, JM ;
WIERZBICKI, A ;
ZUNIGA, J .
CHEMICAL PHYSICS LETTERS, 1988, 150 (3-4) :269-274
[8]   GPU Linear Algebra Libraries and GPGPU Programming for Accelerating MOPAC Semiempirical Quantum Chemistry Calculations [J].
Carvalho Maia, Julio Daniel ;
Urquiza Carvalho, Gabriel Aires ;
Mangueira, Carlos Peixoto, Jr. ;
Santana, Sidney Ramos ;
Formiga Cabral, Lucidio Anjos ;
Rocha, Gerd B. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (09) :3072-3081
[9]   Accelerated direct semiclassical molecular dynamics using a compact finite difference Hessian scheme [J].
Ceotto, Michele ;
Zhuang, Yu ;
Hase, William L. .
JOURNAL OF CHEMICAL PHYSICS, 2013, 138 (05)
[10]   Fighting the curse of dimensionality in first-principles semiclassical calculations: Non-local reference states for large number of dimensions [J].
Ceotto, Michele ;
Tantardini, Gian Franco ;
Aspuru-Guzik, Alan .
JOURNAL OF CHEMICAL PHYSICS, 2011, 135 (21)