Self-assembly with Geometric Tiles

被引:0
|
作者
Fu, Bin [1 ]
Patitz, Matthew J. [1 ]
Schweller, Robert T. [1 ]
Sheline, Robert [1 ]
机构
[1] Univ Texas Pan Amer, Dept Comp Sci, Edinburg, TX 78541 USA
基金
美国国家科学基金会;
关键词
DNA; COMPLEXITY; SHAPES;
D O I
暂无
中图分类号
TP31 [计算机软件];
学科分类号
081202 ; 0835 ;
摘要
In this work we propose a generalization of Winfree's abstract Tile Assembly Model (aTAM) in which tile types are assigned rigid shapes, or geometries, along each tile face. We examine the number of distinct tile types needed to assemble shapes within this model, the temperature required for efficient assembly, and the problem of designing compact geometric faces to meet given compatibility specifications. We pose the following question: can complex geometric tile faces arbitrarily reduce the number of distinct tile types to assemble shapes? Within the most basic generalization of the aTAM, we show that the answer is no. For almost all n at least. Omega(root log n) tile types are required to uniquely assemble an n x n square, regardless of how much complexity is pumped into the face of each tile type. However, we show for all n we can achieve a matching Omega(root log n) tile types, beating the known lower bound of Omega(root log n/ log log n) that holds for almost all n within the aTAM. Further, our result holds at temperature T = 1. Our next result considers a geometric tile model that is a generalization of the 2-handed abstract tile assembly model in which tile aggregates must move together through obstacle free paths within the plane. Within this model we present a novel construction that harnesses the collision free path requirement to allow for the unique assembly of any n x n square with a sleek O(log log n) distinct tile types. This construction is of interest in that it is the first tile self-assembly result to harness collision free planar translation to increase efficiency, whereas previous work has simply used the planarity restriction as a desireable quality that could be achieved at reduced efficiency. This surprisingly low tile type result further emphasizes a fundamental open question: Is it possible to assemble n x n squares with 0(1) distinct tile types? Essentially, how far can the trade off between the number of distinct tile types required for an assembly and the complexity of each tile type itself be taken?
引用
收藏
页码:714 / 725
页数:12
相关论文
共 50 条
  • [1] Geometric tiles and powers and limitations of geometric hindrance in self-assembly
    Daniel Hader
    Matthew J. Patitz
    Natural Computing, 2021, 20 : 243 - 258
  • [2] Geometric Tiles and Powers and Limitations of Geometric Hindrance in Self-assembly
    Hader, Daniel
    Patitz, Matthew J.
    UNCONVENTIONAL COMPUTATION AND NATURAL COMPUTATION, UCNC 2019, 2019, 11493 : 191 - 204
  • [3] Geometric tiles and powers and limitations of geometric hindrance in self-assembly
    Hader, Daniel
    Patitz, Matthew J.
    NATURAL COMPUTING, 2021, 20 (02) : 243 - 258
  • [4] Reflections on tiles (in self-assembly)
    Jacob Hendricks
    Matthew J. Patitz
    Trent A. Rogers
    Natural Computing, 2017, 16 : 295 - 316
  • [5] Reflections on tiles (in self-assembly)
    Hendricks, Jacob
    Patitz, Matthew J.
    Rogers, Trent A.
    NATURAL COMPUTING, 2017, 16 (02) : 295 - 316
  • [6] Programming Self-Assembly of DNA Tiles
    Bellia, Marco
    Occhiuto, M. Eugenia
    FUNDAMENTA INFORMATICAE, 2016, 143 (1-2) : 35 - 49
  • [7] Evolving tiles for automated self-assembly design
    Terrazas, German
    Gheorghe, Marian
    Kendall, Graham
    Krasnogor, Natalio
    2007 IEEE CONGRESS ON EVOLUTIONARY COMPUTATION, VOLS 1-10, PROCEEDINGS, 2007, : 2001 - +
  • [8] Directed Self-Assembly of DNA Tiles into Complex Nanocages
    Tian, Cheng
    Li, Xiang
    Liu, Zhiyu
    Jiang, Wen
    Wang, Guansong
    Mao, Chengde
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2014, 53 (31) : 8041 - 8044
  • [9] Counting by DNA Self-Assembly in the Presence of Rotated Tiles
    Hashempour, Masoud
    Arani, Zahra Mashreghian
    Lombardi, Fabrizio
    IEEE TRANSACTIONS ON NANOTECHNOLOGY, 2011, 10 (03) : 632 - 638
  • [10] Self-assembly of 3D magnetic tiles
    Rabl, Jessica
    Digital Fabrication 2006, Final Program and Proceedings, 2006, : 187 - 187