DNA barcode-based delineation of putative species: efficient start for taxonomic workflows

被引:261
作者
Kekkonen, Mari [1 ]
Hebert, Paul D. N. [2 ]
机构
[1] Univ Helsinki, Finnish Museum Nat Hist, Zool Unit, FI-00014 Helsinki, Finland
[2] Univ Guelph, Biodivers Inst Ontario, Guelph, ON N1G 2W1, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
Australia; Automatic Barcode Gap Discovery; Barcode Index Number; DNA barcoding; General Mixed Yule-coalescent; Hypertrophinae; DELIMITATION; PHYLOGENETICS; BIODIVERSITY; BOUNDARIES; DIVERSITY; EVOLUTION; INSIGHTS; HISTORY; MODEL; WOOD;
D O I
10.1111/1755-0998.12233
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The analysis of DNA barcode sequences with varying techniques for cluster recognition provides an efficient approach for recognizing putative species (operational taxonomic units, OTUs). This approach accelerates and improves taxonomic workflows by exposing cryptic species and decreasing the risk of synonymy. This study tested the congruence of OTUs resulting from the application of three analytical methods (ABGD, BIN, GMYC) to sequence data for Australian hypertrophine moths. OTUs supported by all three approaches were viewed as robust, but 20% of the OTUs were only recognized by one or two of the methods. These OTUs were examined for three criteria to clarify their status. Monophyly and diagnostic nucleotides were both uninformative, but information on ranges was useful as sympatric sister OTUs were viewed as distinct, while allopatric OTUs were merged. This approach revealed 124 OTUs of Hypertrophinae, a more than twofold increase from the currently recognized 51 species. Because this analytical protocol is both fast and repeatable, it provides a valuable tool for establishing a basic understanding of species boundaries that can be validated with subsequent studies.
引用
收藏
页码:706 / 715
页数:10
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