Geomicrobiology: How molecular-scale interactions underpin biogeochemical systems

被引:177
作者
Newman, DK [1 ]
Banfield, JF
机构
[1] CALTECH, Div Geol & Planetary Sci, Pasadena, CA 91125 USA
[2] Univ Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
[3] Univ Calif Berkeley, Dept Environm Sci Policy & Management, Berkeley, CA 94720 USA
关键词
D O I
10.1126/science.1010716
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Microorganisms populate every habitable environment on Earth and, through their metabolic activity, affect the chemistry and physical properties of their surroundings. They have done this for billions of years. Over the past decade, genetic, biochemical, and genomic approaches have allowed us to document the diversity of microbial life in geologic systems without cultivation, as well as to begin to elucidate their function. With expansion of culture-independent analyses of microbial communities, it will be possible to quantify gene activity at the species level. Genome-enabled biogeochemical modeling may provide an opportunity to determine how communities function, and how they shape and are shaped by their environments.
引用
收藏
页码:1071 / 1077
页数:7
相关论文
共 84 条
[1]   Energetics of overall metabolic reactions of thermophilic and hyperthermophilic Archaea and Bacteria [J].
Amend, JP ;
Shock, EL .
FEMS MICROBIOLOGY REVIEWS, 2001, 25 (02) :175-243
[2]   Molecular phylogenetic analysis of a bacterial community in Sulphur River, Parker Cave, Kentucky [J].
Angert, ER ;
Northup, DE ;
Reysenbach, AL ;
Peek, AS ;
Goebel, BM ;
Pace, NR .
AMERICAN MINERALOGIST, 1998, 83 (11-12) :1583-1592
[3]   Photochemical cycling of iron in the surface ocean mediated by microbial iron(III)-binding ligands [J].
Barbeau, K ;
Rue, EL ;
Bruland, KW ;
Butler, A .
NATURE, 2001, 413 (6854) :409-413
[4]   Microbial life in the underworld: Biogenicity in secondary mineral formations [J].
Barton, HA ;
Spear, JR ;
Pace, NR .
GEOMICROBIOLOGY JOURNAL, 2001, 18 (03) :359-368
[5]  
Beijerinck M.W., 1888, BOT ZTG, V46, P725
[6]   Bacterial rhodopsin:: Evidence for a new type of phototrophy in the sea [J].
Béjà, O ;
Aravind, L ;
Koonin, EV ;
Suzuki, MT ;
Hadd, A ;
Nguyen, LP ;
Jovanovich, S ;
Gates, CM ;
Feldman, RA ;
Spudich, JL ;
Spudich, EN ;
DeLong, EF .
SCIENCE, 2000, 289 (5486) :1902-1906
[7]   Proteorhodopsin phototrophy in the ocean [J].
Béjà, O ;
Spudich, EN ;
Spudich, JL ;
Leclerc, M ;
DeLong, EF .
NATURE, 2001, 411 (6839) :786-789
[8]  
Beliaev Alex S., 2002, OMICS A Journal of Integrative Biology, V6, P39, DOI 10.1089/15362310252780834
[9]   MtrC, an outer membrane decahaem c cytochrome required for metal reduction in Shewanella putrefaciens MR-1 [J].
Beliaev, AS ;
Saffarini, DA ;
McLaughlin, JL ;
Hunnicutt, D .
MOLECULAR MICROBIOLOGY, 2001, 39 (03) :722-730
[10]  
BLAKE RC, 1993, FEMS MICROBIOL REV, V11, P9