Genome-Wide Identification, Characterization, and Expression Analyses of P-Type ATPase Superfamily Genes in Soybean

被引:10
|
作者
Zhao, Bingqian [1 ]
Wu, Haicheng [1 ]
Xu, Wenjing [2 ]
Zhang, Wei [2 ]
Chen, Xi [3 ]
Zhu, Yiyong [4 ]
Chen, Huatao [2 ]
Zeng, Houqing [1 ]
机构
[1] Hangzhou Normal Univ, Coll Life & Environm Sci, Hangzhou 311121, Peoples R China
[2] Jiangsu Acad Agr Sci, Inst Ind Crops, Nanjing 210014, Peoples R China
[3] Nanjing Agr Univ, Coll Life Sci, Dept Biochem & Mol Biol, Nanjing 210095, Peoples R China
[4] Nanjing Agr Univ, Coll Resources & Environm Sci, Nanjing 210095, Peoples R China
来源
AGRONOMY-BASEL | 2021年 / 11卷 / 01期
关键词
P-type ATPase; ion pump; phylogenetic analysis; expression analysis; tissue expression pattern; stress; duplication; evolution; cis-acting element; MEMBRANE H+-ATPASE; POLLEN-TUBE GROWTH; PROTON PUMP ATPASE; TRANSCRIPTION FACTORS; AMMONIUM-NUTRITION; BINDING DOMAIN; ION PUMPS; ARABIDOPSIS; FAMILY; TRANSPORT;
D O I
10.3390/agronomy11010071
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
P-type ATPases are transmembrane pumps of cations and phospholipids. They are energized by hydrolysis of ATP and play important roles in a wide range of fundamental cellular and physiological processes during plant growth and development. However, the P-type ATPase superfamily genes have not been characterized in soybean. Here, we performed genome-wide bioinformatic and expression analyses of the P-type ATPase superfamily genes in order to explore the potential functions of P-type ATPases in soybean. A total of 105 putative P-type ATPase genes were identified in the soybean genome. Phylogenetic relationship analysis of the P-type ATPase genes indicated that they can be divided into five subfamilies including P1B, P2A/B, P3A, P4 and P5. Proteins belonging to the same subfamily shared conserved domains. Forty-seven gene pairs were related to segmental duplication, which contributed to the expansion of the P-type ATPase genes during the evolution of soybean. Most of the P-type ATPase genes contained hormonal- and/or stress-related cis-elements in their promoter regions. Expression analysis by retrieving RNA-sequencing datasets suggested that almost all of the P-type ATPase genes could be detected in soybean tissues, and some genes showed tissue-specific expression patterns. Nearly half of the P-type ATPase genes were found to be significantly induced or repressed under stresses like salt, drought, cold, flooding, and/or phosphate starvation. Four genes were significantly affected by rhizobia inoculation in root hairs. The induction of two P2B-ATPase genes, GmACA1 and GmACA2, by phosphate starvation was confirmed by quantitative RT-PCR. This study provides information for understanding the evolution and biological functions of the P-type ATPase superfamily genes in soybean.
引用
收藏
页数:25
相关论文
共 50 条
  • [1] Genome-Wide Identification and Characterization of TALE Superfamily Genes in Soybean (Glycine max L.)
    Wang, Liang
    Yang, Xinyu
    Gao, Yingqi
    Yang, Shouping
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (08)
  • [2] Genome-wide characterization and expression analyses of the MYB superfamily genes during developmental stages in Chinese jujube
    Ji Qing
    Wang Dawei
    Zhou Jun
    Xu Yulan
    Shen Bingqi
    Zhou Fan
    PEERJ, 2019, 7
  • [3] The P-Type ATPase Superfamily
    Chan, Henry
    Babayan, Vartan
    Blyumin, Elya
    Gandhi, Charmy
    Hak, Kunal
    Harake, Danielle
    Kumar, Kris
    Lee, Perry
    Li, Tze T.
    Liu, Hao Yi
    Lo, Tony Chung Tung
    Meyer, Cynthia J.
    Stanford, Steven
    Zamora, Krista S.
    Saier, Milton H., Jr.
    JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY, 2010, 19 (1-2) : 5 - 104
  • [4] Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)
    Wang, Liang
    Ding, Xianlong
    Gao, Yingqi
    Yang, Shouping
    BMC PLANT BIOLOGY, 2020, 20 (01)
  • [5] The myosin family genes in soybean: Genome-wide identification and expression analysis
    Duan, Xiangbo
    Zhang, Ke
    Duanmu, Huizi
    Yu, Yang
    SOUTH AFRICAN JOURNAL OF BOTANY, 2023, 160 : 338 - 346
  • [6] Genome-Wide Identification and Characterization of RBR Ubiquitin Ligase Genes in Soybean
    Chen, Pei
    Zhang, Xiaolian
    Zhao, Tuanjie
    Li, Yan
    Gai, Junyi
    PLOS ONE, 2014, 9 (01):
  • [7] Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)
    Liang Wang
    Xianlong Ding
    Yingqi Gao
    Shouping Yang
    BMC Plant Biology, 20
  • [8] Genome-wide identification of PME genes, evolution and expression analyses in soybean (Glycine max L.)
    Liang Wang
    Yingqi Gao
    Songming Wang
    Qiqi Zhang
    Shouping Yang
    BMC Plant Biology, 21
  • [9] Genome-wide identification and expression analyses of nitrate transporter family genes in wild soybean (Glycine soja)
    You, Hongguang
    Liu, Yuanming
    Thuy Nguyen Minh
    Lu, Haoran
    Zhang, Pengmin
    Li, Wenfeng
    Xiao, Jialei
    Ding, Xiaodong
    Li, Qiang
    JOURNAL OF APPLIED GENETICS, 2020, 61 (04) : 489 - 501
  • [10] Genome-wide identification of PME genes, evolution and expression analyses in soybean (Glycine max L.)
    Wang, Liang
    Gao, Yingqi
    Wang, Songming
    Zhang, Qiqi
    Yang, Shouping
    BMC PLANT BIOLOGY, 2021, 21 (01)