Maternal variability of Croatian Spotted goat (Capra hircus)

被引:1
作者
Drzaic, Ivana [1 ]
Curik, Ino [1 ]
Novosel, Dinko [1 ]
Cubric-Curik, Vlatka [1 ]
机构
[1] Univ Zagreb, Fac Agr, Dept Anim Sci, Zagreb, Croatia
关键词
ancestral maternal diversity; D-loop; Mediterranean goat population; phylogeography; unique haplotypes; MITOCHONDRIAL-DNA DIVERSITY; D-LOOP; PHYLOGEOGRAPHIC STRUCTURE; INITIAL DOMESTICATION; POPULATION-GROWTH; GENETIC DIVERSITY; ORIGINS; BREEDS;
D O I
10.17221/240/2018-CJAS
中图分类号
S8 [畜牧、 动物医学、狩猎、蚕、蜂];
学科分类号
0905 ;
摘要
This study provides the first characterization of maternal ancestry and mitochondrial DNA (mtDNA) diversity in the Croatian Spotted goat (CSG), the most important autochthonous goat breed in Croatia. CSG (n = 25) were randomly sampled from seven herds and a 660-bp fragment from the mtDNA D-loop region was sequenced. Those sequences were compared with 122 corresponding GenBank sequences from goat populations in Albania, Austria, Egypt, Greece, Italy, Romania and Switzerland. CSG showed a great polymorphism (only three out of 17 haplotypes were shared) with high a haplotype (Hd = 0.967 +/- 0.019) and nucleotide diversity (pi = 0.01305 +/- 0.00068). When compared with Mediterranean and ancient goats, all of the 25 CSG were randomly scattered inside haplogroup A showing the weak phylogeographic structure with within-breed variance accounting for 91.76% of the genetic variation. In addition, population expansion tests (mismatch distribution and Fu's Fs statistic) supported these results suggesting at least one population expansion.
引用
收藏
页码:248 / 254
页数:7
相关论文
共 32 条
[1]   Strong phylogeographic relationships among three goat breeds from the Canary Islands [J].
Amills, M ;
Capote, J ;
Tomàs, A ;
Kelly, L ;
Obexer-Ruff, G ;
Angiolillo, A ;
Sanchez, A .
JOURNAL OF DAIRY RESEARCH, 2004, 71 (03) :257-262
[2]   Mitochondrial DNA diversity and origins of South and Central American goats [J].
Amills, M. ;
Ramirez, O. ;
Tomas, A. ;
Badaoui, B. ;
Marmi, J. ;
Acosta, J. ;
Sanchez, A. ;
Capote, J. .
ANIMAL GENETICS, 2009, 40 (03) :315-322
[3]  
[Anonymous], 2017, R LANG ENV STAT COMP
[4]   Median-joining networks for inferring intraspecific phylogenies [J].
Bandelt, HJ ;
Forster, P ;
Röhl, A .
MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (01) :37-48
[5]   STRUCTURAL CONSERVATION AND VARIATION IN THE D-LOOP-CONTAINING REGION OF VERTEBRATE MITOCHONDRIAL-DNA [J].
BROWN, GG ;
GADALETA, G ;
PEPE, G ;
SACCONE, C ;
SBISA, E .
JOURNAL OF MOLECULAR BIOLOGY, 1986, 192 (03) :503-511
[6]   Mitochondrial diversity and phylogeographic structure of Chinese domestic goats [J].
Chen, SY ;
Su, YH ;
Wu, SF ;
Sha, T ;
Zhang, YP .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2005, 37 (03) :804-814
[7]  
Croatian Agricultural Agency, 2017, ANN REPORT
[8]   Ancient goat genomes reveal mosaic domestication in the Fertile Crescent [J].
Daly, Kevin G. ;
Delser, Pierpaolo Maisano ;
Mullin, Victoria E. ;
Scheu, Amelie ;
Mattiangeli, Valeria ;
Teasdale, Matthew D. ;
Hare, Andrew J. ;
Burger, Joachim ;
Verdugo, Marta Pereira ;
Collins, Matthew J. ;
Kehati, Ron ;
Erek, Cevdet Merih ;
Bar-Oz, Guy ;
Pompanon, Francois ;
Cumer, Tristan ;
Cakirlar, Canan ;
Mohaseb, Azadeh Fatemeh ;
Decruyenaere, Delphine ;
Davoudi, Hossein ;
Cevik, Ozlem ;
Rollefson, Gary ;
Vigne, Jean-Denis ;
Khazaeli, Roya ;
Fathi, Homa ;
Doost, Sanaz Beizaee ;
Sorkhani, Roghayeh Rahimi ;
Vahdati, Ali Akbar ;
Sauer, Eberhard W. ;
Kharanaghi, Hossein Azizi ;
Maziar, Sepideh ;
Gasparian, Boris ;
Pinhasi, Ron ;
Martin, Louise ;
Orton, David ;
Arbuckle, Benjamin S. ;
Benecke, Norbert ;
Manica, Andrea ;
Horwitz, Liora Kolska ;
Mashkour, Marjan ;
Bradley, Daniel G. .
SCIENCE, 2018, 361 (6397) :85-87
[9]   Farmers and their languages: The first expansions [J].
Diamond, J ;
Bellwood, P .
SCIENCE, 2003, 300 (5619) :597-603
[10]   Bayesian Phylogenetics with BEAUti and the BEAST 1.7 [J].
Drummond, Alexei J. ;
Suchard, Marc A. ;
Xie, Dong ;
Rambaut, Andrew .
MOLECULAR BIOLOGY AND EVOLUTION, 2012, 29 (08) :1969-1973