Much of animal-associated microbiome research has been conducted in species for which little is known of their natural ecology and evolution. Microbiome studies that combine population genetic, environment, and geographic data for wild organisms can be very informative, especially in situations where host genetic variation and the environment both influence microbiome variation. The few studies that have related population genetic and microbiome variation in wild populations have been constrained by observation-based kinship data or incomplete genomic information. Here we integrate population genomic and microbiome analyses in wild threespine stickleback fish distributed throughout western Oregon, USA. We found that gut microbiome diversity and composition partitioned more among than within wild host populations and was better explained by host population genetic divergence than by environment and geography. We also identified gut microbial taxa that were most differentially abundant across environments and across genetically divergent populations. Our findings highlight the benefits of studies that investigate host-associated microbiomes in wild organisms.
机构:
Univ Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Univ Texas Austin, Sect Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Bolnick, Daniel I.
;
Snowberg, Lisa K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Texas Austin, Sect Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Snowberg, Lisa K.
;
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Dept Biol Sci, Flagstaff, AZ 86011 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Caporaso, J. Gregory
;
Lauber, Chris
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Lauber, Chris
;
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USA
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
Univ Colorado, BioFrontiers Inst, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Knight, Rob
;
Stutz, William E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Texas Austin, Sect Integrat Biol, Austin, TX 78712 USA
Univ Colorado, Dept Ecol & Evolut, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
机构:
Univ Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Univ Texas Austin, Dept Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Bolnick, Daniel I.
;
Snowberg, Lisa K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Snowberg, Lisa K.
;
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机构:
Hirsch, Philipp E.
;
Lauber, Christian L.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Lauber, Christian L.
;
Org, Elin
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Los Angeles, Dept Med, Div Cardiol, Los Angeles, CA 90095 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Org, Elin
;
Parks, Brian
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Los Angeles, Dept Med, Div Cardiol, Los Angeles, CA 90095 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Parks, Brian
;
Lusis, Aldons J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Los Angeles, Dept Med, Div Cardiol, Los Angeles, CA 90095 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Lusis, Aldons J.
;
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USA
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
Univ Colorado, BioFrontiers Inst, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Knight, Rob
;
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Dept Biol Sci, Flagstaff, AZ 86011 USA
Argonne Natl Lab, Inst Genom & Syst Biol, Argonne, IL 60439 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Caporaso, J. Gregory
;
Svanback, Richard
论文数: 0引用数: 0
h-index: 0
机构:
Uppsala Univ, Dept Ecol & Genet, SE-75236 Uppsala, SwedenUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
机构:
Univ Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Univ Texas Austin, Sect Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Bolnick, Daniel I.
;
Snowberg, Lisa K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Texas Austin, Sect Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Snowberg, Lisa K.
;
论文数: 引用数:
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机构:
Hirsch, Philipp E.
;
Lauber, Christian L.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Lauber, Christian L.
;
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USA
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
Univ Colorado, BioFrontiers Inst, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Knight, Rob
;
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Dept Biol Sci, Flagstaff, AZ 86011 USA
Argonne Natl Lab, Inst Genom & Syst Biol, Argonne, IL 60439 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Caporaso, J. Gregory
;
Svanback, Richard
论文数: 0引用数: 0
h-index: 0
机构:
Uppsala Univ, Dept Ecol & Genet, SE-75236 Uppsala, SwedenUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
机构:
Univ Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Burns, A. R.
;
Watral, V.
论文数: 0引用数: 0
h-index: 0
机构:
Oregon State Univ, Dept Microbiol, Corvallis, OR 97331 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Watral, V.
;
Sichel, S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Oregon, Inst Mol Biol, Eugene, OR 97403 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Sichel, S.
;
Spagnoli, S.
论文数: 0引用数: 0
h-index: 0
机构:
Oregon State Univ, Dept Biomed Sci, Corvallis, OR 97331 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Spagnoli, S.
;
Banse, A. V.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Oregon, Inst Mol Biol, Eugene, OR 97403 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Banse, A. V.
;
Mittge, E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Oregon, Inst Mol Biol, Eugene, OR 97403 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Mittge, E.
;
Sharpton, T. J.
论文数: 0引用数: 0
h-index: 0
机构:
Oregon State Univ, Dept Microbiol, Corvallis, OR 97331 USA
Oregon State Univ, Dept Stat, Corvallis, OR 97331 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Sharpton, T. J.
;
Guillemin, K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Oregon, Inst Mol Biol, Eugene, OR 97403 USA
Canadian Inst Adv Res, Humans & Microbiome Program, Toronto, ON, CanadaUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Guillemin, K.
;
Kent, M. L.
论文数: 0引用数: 0
h-index: 0
机构:
Oregon State Univ, Dept Microbiol, Corvallis, OR 97331 USA
Oregon State Univ, Dept Biomed Sci, Corvallis, OR 97331 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
机构:
Univ Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Univ Texas Austin, Sect Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Bolnick, Daniel I.
;
Snowberg, Lisa K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Texas Austin, Sect Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Snowberg, Lisa K.
;
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Dept Biol Sci, Flagstaff, AZ 86011 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Caporaso, J. Gregory
;
Lauber, Chris
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Lauber, Chris
;
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USA
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
Univ Colorado, BioFrontiers Inst, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Knight, Rob
;
Stutz, William E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Texas Austin, Sect Integrat Biol, Austin, TX 78712 USA
Univ Colorado, Dept Ecol & Evolut, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
机构:
Univ Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Univ Texas Austin, Dept Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Bolnick, Daniel I.
;
Snowberg, Lisa K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Snowberg, Lisa K.
;
论文数: 引用数:
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机构:
Hirsch, Philipp E.
;
Lauber, Christian L.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Lauber, Christian L.
;
Org, Elin
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Los Angeles, Dept Med, Div Cardiol, Los Angeles, CA 90095 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Org, Elin
;
Parks, Brian
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Los Angeles, Dept Med, Div Cardiol, Los Angeles, CA 90095 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Parks, Brian
;
Lusis, Aldons J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Los Angeles, Dept Med, Div Cardiol, Los Angeles, CA 90095 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Lusis, Aldons J.
;
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USA
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
Univ Colorado, BioFrontiers Inst, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Knight, Rob
;
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Dept Biol Sci, Flagstaff, AZ 86011 USA
Argonne Natl Lab, Inst Genom & Syst Biol, Argonne, IL 60439 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Caporaso, J. Gregory
;
Svanback, Richard
论文数: 0引用数: 0
h-index: 0
机构:
Uppsala Univ, Dept Ecol & Genet, SE-75236 Uppsala, SwedenUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
机构:
Univ Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Univ Texas Austin, Sect Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Bolnick, Daniel I.
;
Snowberg, Lisa K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Texas Austin, Sect Integrat Biol, Austin, TX 78712 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Snowberg, Lisa K.
;
论文数: 引用数:
h-index:
机构:
Hirsch, Philipp E.
;
Lauber, Christian L.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Lauber, Christian L.
;
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USA
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
Univ Colorado, BioFrontiers Inst, Boulder, CO 80309 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Knight, Rob
;
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Dept Biol Sci, Flagstaff, AZ 86011 USA
Argonne Natl Lab, Inst Genom & Syst Biol, Argonne, IL 60439 USAUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
Caporaso, J. Gregory
;
Svanback, Richard
论文数: 0引用数: 0
h-index: 0
机构:
Uppsala Univ, Dept Ecol & Genet, SE-75236 Uppsala, SwedenUniv Texas Austin, Howard Hughes Med Inst, Austin, TX 78712 USA
机构:
Univ Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Burns, A. R.
;
Watral, V.
论文数: 0引用数: 0
h-index: 0
机构:
Oregon State Univ, Dept Microbiol, Corvallis, OR 97331 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Watral, V.
;
Sichel, S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Oregon, Inst Mol Biol, Eugene, OR 97403 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Sichel, S.
;
Spagnoli, S.
论文数: 0引用数: 0
h-index: 0
机构:
Oregon State Univ, Dept Biomed Sci, Corvallis, OR 97331 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Spagnoli, S.
;
Banse, A. V.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Oregon, Inst Mol Biol, Eugene, OR 97403 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Banse, A. V.
;
Mittge, E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Oregon, Inst Mol Biol, Eugene, OR 97403 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Mittge, E.
;
Sharpton, T. J.
论文数: 0引用数: 0
h-index: 0
机构:
Oregon State Univ, Dept Microbiol, Corvallis, OR 97331 USA
Oregon State Univ, Dept Stat, Corvallis, OR 97331 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Sharpton, T. J.
;
Guillemin, K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Oregon, Inst Mol Biol, Eugene, OR 97403 USA
Canadian Inst Adv Res, Humans & Microbiome Program, Toronto, ON, CanadaUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA
Guillemin, K.
;
Kent, M. L.
论文数: 0引用数: 0
h-index: 0
机构:
Oregon State Univ, Dept Microbiol, Corvallis, OR 97331 USA
Oregon State Univ, Dept Biomed Sci, Corvallis, OR 97331 USAUniv Oregon, Inst Ecol & Evolutionary Biol, Eugene, OR 97403 USA