Structure at 1.9 Å resolution of a quinohemoprotein alcohol dehydrogenase from Pseudomonas putida HK5

被引:45
作者
Chen, ZW
Matsushita, K
Yamashita, T
Fujii, TA
Toyama, H
Adachi, O
Bellamy, HD
Mathews, FS [1 ]
机构
[1] Washington Univ, Sch Med, Dept Biochem & Mol Biophys, St Louis, MO 63110 USA
[2] Yamaguchi Univ, Dept Biol Chem, Yamaguchi 7538515, Japan
[3] Stanford Synchrotron Radiat Lab, Stanford, CA 94309 USA
关键词
alcohol dehydrogenase; electron transfer; oxidation-reduction; pyrroloquinoline quinone; quinohemoprotein; x-ray crystallography;
D O I
10.1016/S0969-2126(02)00774-8
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The type II quinohemoprotein alcohol dehydrogenase of Pseudomonas putida is a periplasmic enzyme that oxidizes substrate alcohols to the aldehyde and transfers electrons first to pyrroloquinoline quinone (PQQ) and then to an internal heme group. The 1.9 Angstrom resolution crystal structure reveals that the enzyme contains a large N-terminal eight-stranded beta propeller domain (similar to60 kDa) similar to methanol dehydrogenase and a small C-terminal c-type cytochrome domain (similar to10 kDa) similar to the cytochrome subunit of p-cresol methylhydoxylase. The PQQ is bound near the axis of the propeller domain about 14 Angstrom from the heme. A molecule of acetone, the product of the oxidation of isopropanol present during crystallization, appears to be bound in the active site cavity.
引用
收藏
页码:837 / 849
页数:13
相关论文
共 54 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   Quinoprotein-catalysed reactions [J].
Anthony, C .
BIOCHEMICAL JOURNAL, 1996, 320 :697-711
[3]  
ANTHONY C, 1993, PRINCIPLES APPL QUIN, P17
[4]   THE ROLE OF THE NOVEL DISULFIDE RING IN THE ACTIVE-SITE OF THE QUINOPROTEIN METHANOL DEHYDROGENASE FROM METHYLOBACTERIUM-EXTORQUENS [J].
AVEZOUX, A ;
GOODWIN, MG ;
ANTHONY, C .
BIOCHEMICAL JOURNAL, 1995, 307 :735-741
[5]   PROTEIN ELECTRON-TRANSFER RATES SET BY THE BRIDGING SECONDARY AND TERTIARY STRUCTURE [J].
BERATAN, DN ;
BETTS, JN ;
ONUCHIC, JN .
SCIENCE, 1991, 252 (5010) :1285-1288
[6]   THE ACTIVE-SITE OF METHANOL DEHYDROGENASE CONTAINS A DISULFIDE BRIDGE BETWEEN ADJACENT CYSTEINE RESIDUES [J].
BLAKE, CCF ;
GHOSH, M ;
HARLOS, K ;
AVEZOUX, A ;
ANTHONY, C .
NATURE STRUCTURAL BIOLOGY, 1994, 1 (02) :102-105
[7]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[8]   AZURIN FROM PSEUDOMONAS-PUTIDA - AN ELECTRON-ACCEPTOR FOR PARA-CRESOL METHYLHYDROXYLASE [J].
CAUSER, MJ ;
HOPPER, DJ ;
MCINTIRE, WS ;
SINGER, TP .
BIOCHEMICAL SOCIETY TRANSACTIONS, 1984, 12 (06) :1131-1132
[9]   STRUCTURE OF AN ELECTRON-TRANSFER COMPLEX - METHYLAMINE DEHYDROGENASE, AMICYANIN, AND CYTOCHROME-C(551I) [J].
CHEN, LY ;
DURLEY, RCE ;
MATHEWS, FS ;
DAVIDSON, VL .
SCIENCE, 1994, 264 (5155) :86-90
[10]   Crystallization and preliminary diffraction studies of two quinoprotein alcohol dehydrogenases (ADHs):: a soluble monomeric ADH from Pseudomonas putida HK5 (ADH-IIB) and a heterotrimeric membrane-bound ADH from Gluconobacter suboxydans (ADH-GS) [J].
Chen, ZW ;
Baruch, P ;
Mathews, FS ;
Matsushita, K ;
Yamashita, T ;
Toyama, H ;
Adachi, O .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1999, 55 :1933-1936