Correlation between bacterial G plus C content, genome size and the G plus C content of associated plasmids and bacteriophages

被引:89
作者
Almpanis, Apostolos [1 ,2 ]
Swain, Martin [1 ]
Gatherer, Derek [3 ]
McEwan, Neil [1 ,4 ]
机构
[1] Aberystwyth Univ, Aberystwyth, Dyfed, Wales
[2] Newcastle Univ, Newcastle Upon Tyne, Tyne & Wear, England
[3] Univ Lancaster, Lancaster, England
[4] Robert Gordon Univ, Sch Pharm & Life Sci, Aberdeen, Scotland
来源
MICROBIAL GENOMICS | 2018年 / 4卷 / 04期
关键词
genome G plus C content; genome length; bacteria; plasmids; BASE COMPOSITION; EVOLUTION; LENGTH; DNAS;
D O I
10.1099/mgen.0.000168
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Based on complete bacterial genome sequence data, we demonstrate a correlation between bacterial chromosome length and the G+C content of the genome, with longer genomes having higher G+C contents. The correlation value decreases at shorter genome sizes, where there is a wider spread of G+C values. However, although significant (P<0.001), the correlation value (Pearson R=0.58) suggests that other factors also have a significant influence. A similar pattern was seen for plasmids; longer plasmids had higher G+C values, although the large number of shorter plasmids had a wide spread of G+C values. There was also a significant (P<0.0001) correlation between the G+C content of plasmids and the G+C content of their bacterial host. Conversely, the G+C content of bacteriophages tended to reduce with larger genome sizes, and although there was a correlation between host genome G+C content and that of the bacteriophage, it was not as strong as that seen between plasmids and their hosts.
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页数:8
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