Emerging Applications of Single-Cell Diagnostics

被引:8
作者
Shirai, M. [1 ]
Taniguchi, T. [1 ]
Kambara, H. [1 ]
机构
[1] Hitachi Ltd, Cent Res Lab, Tokyo, Japan
来源
CHEMICAL DIAGNOSTICS: FROM BENCH TO BEDSIDE | 2014年 / 336卷
关键词
Digital counting of cDNA; Digital PCR; Droplet microfluidics; Gene expression profile; Genome; Heterogeneity; Microfluidics; Next generation DNA sequencer (NGS); PCR bias; Single cell analysis; Single cell cDNA library; Transcriptome; NONINVASIVE PRENATAL-DIAGNOSIS; GENE-EXPRESSION; TRANSCRIPTOME ANALYSIS; MASS-SPECTROMETRY; DRUG RESPONSES; STEM-CELLS; DNA; GENOME; GENERATION; REVEALS;
D O I
10.1007/128_2012_327
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
The performance of DNA sequencers (next generation sequencing) is rapidly enhanced these days, being used for genetic diagnostics. Although many phenomena could be elucidated with such massive genome data, it is still a big challenge to obtain comprehensive understanding of diseases and the relevant biology at the cellular level. In general terms, the data obtained to date are averages of ensembles of cells, but it is not certain whether the same features are the same inside an individual cell. Accordingly, important information may be masked by the averaging process. As the technologies for analyzing bio-molecular components in single cells are being developed, single cell analysis seems promising to address the current limitations due to averaging problems. Although the technologies for single cell analysis are still at the infant stage, the single cell approach has the potential to improve the accuracy of diagnosis based on knowledge of intra- and inter-cellular networks. In this review several technologies and applications (especially medical applications) of genome and transcriptome analysis or single cells are described.
引用
收藏
页码:99 / 116
页数:18
相关论文
共 103 条
  • [1] Counting single native biomolecules and intact viruses with color-coded nanoparticles
    Agrawal, A
    Zhang, CY
    Byassee, T
    Tripp, RA
    Nie, SM
    [J]. ANALYTICAL CHEMISTRY, 2006, 78 (04) : 1061 - 1070
  • [2] Transcriptional features of genomic regulatory blocks
    Akalin, Altuna
    Fredman, David
    Arner, Erik
    Dong, Xianjun
    Bryne, Jan Christian
    Suzuki, Harukazu
    Daub, Carsten O.
    Hayashizaki, Yoshihide
    Lenhard, Boris
    [J]. GENOME BIOLOGY, 2009, 10 (04):
  • [3] April CS, 2011, METHODS MOL BIOL, V784, P77, DOI 10.1007/978-1-61779-289-2_6
  • [4] Transcriptome Profiling Using Next-Generation Sequencing
    Asmann, Yan W.
    Wallace, Michael B.
    Thompson, E. Aubrey
    [J]. GASTROENTEROLOGY, 2008, 135 (05) : 1466 - 1468
  • [5] Stimulus-dependent dynamics of p53 in single cells
    Batchelor, Eric
    Loewer, Alexander
    Mock, Caroline
    Lahav, Galit
    [J]. MOLECULAR SYSTEMS BIOLOGY, 2011, 7
  • [6] Baxter I, 2009, PLOS ONE, V4, pe4108
  • [7] Dissection of gene regulatory networks in embryonic stem cells by means of high-throughput sequencing
    Beisel, Christian
    Paro, Renato
    [J]. BIOLOGICAL CHEMISTRY, 2009, 390 (11) : 1139 - 1144
  • [8] Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum
    Bendall, Sean C.
    Simonds, Erin F.
    Qiu, Peng
    Amir, El-ad D.
    Krutzik, Peter O.
    Finck, Rachel
    Bruggner, Robert V.
    Melamed, Rachel
    Trejo, Angelica
    Ornatsky, Olga I.
    Balderas, Robert S.
    Plevritis, Sylvia K.
    Sachs, Karen
    Pe'er, Dana
    Tanner, Scott D.
    Nolan, Garry P.
    [J]. SCIENCE, 2011, 332 (6030) : 687 - 696
  • [9] Unraveling epigenetic regulation in embryonic stem cells
    Bibikova, Marina
    Laurent, Louise C.
    Ren, Bing
    Loring, Jeanne F.
    Fan, Jian-Bing
    [J]. CELL STEM CELL, 2008, 2 (02) : 123 - 134
  • [10] BRADY G, 1993, METHOD ENZYMOL, V225, P611