Genome-wide survey and expression analysis of the SLAC/SLAH gene family in pear (Pyrus bretschneideri) and other members of the Rosaceae

被引:1
|
作者
Chen, Guodong [1 ]
Li, Xiaolong [1 ]
Qiao, Xin [1 ]
Li, Jiaming [1 ]
Wang, Li [1 ]
Kou, Xiaobing [1 ]
Wu, Xiao [1 ]
Wang, Guoming [1 ]
Yin, Hao [1 ]
Wang, Peng [1 ]
Zhang, Shaoling [1 ]
Wu, Juyou [1 ]
机构
[1] Nanjing Agr Univ, State Key Lab Crop Genet & Gerrnplasm Enhancement, Ctr Pear Engn Technol Res, Coll Hort, Nanjing 210095, Jiangsu, Peoples R China
基金
中国博士后科学基金;
关键词
Slow anion channel; Pear (Pyrus bretschneideri); Rosaceae; Subcellular localization; SLAC1 ANION CHANNEL; PROTEIN-KINASES; RECONSTITUTION; CONDUCTANCE; DUPLICATION; PROTOPLASTS; EVOLUTION; HOMOLOG; SYSTEM; SLAH3;
D O I
10.1016/j.ygeno.2018.07.004
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
S-type anion channels, which play important roles in plant anion (such as nitrate and chloride) transport, growth and development, abiotic stress responses and hormone signaling. However, there is far less information about this family in Rosaceae species. We performed a genome-wide analysis and identified SLAC/SLAH gene family members in pear (Pyrus bretschneideri) and four other species of Rosaceae. A total of 21 SLAC/SLAH genes were identified from the five Rosaceae species. Based on the structural characteristics and a phylogenetic analysis of these genes, the SLAC/SLAH gene family could be classified into three main groups. Transcriptome data demonstrated that PbrSLAC/SLAH genes were detected in all parts of the pear. PbrSLAC/SLAH genes were only located on the plasma membrane in transient expression experiments in Arabidopsis protoplasts cells. These results provide valuable information that increases our understanding of the evolution, expression and functions of the SLAC/SLAH gene family in higher plants.
引用
收藏
页码:1097 / 1107
页数:11
相关论文
共 50 条
  • [31] Comparative analysis of the P-type ATPase gene family in seven Rosaceae species and an expression analysis in pear (Pyrus bretschneideri Rehd.)
    Zhang, Yuxin
    Li, Qionghou
    Xu, Linlin
    Qiao, Xin
    Liu, Chunxin
    Zhang, Shaoling
    GENOMICS, 2020, 112 (03) : 2550 - 2563
  • [32] Comprehensive genome-wide analysis of the pear (Pyrus bretschneideri) laccase gene (PbLAC) family and functional identification of PbLAC1 involved in lignin biosynthesis
    Cheng, Xi
    Li, Guohui
    Ma, Chenhui
    Abdullah, Muhammad
    Zhang, Jinyun
    Zhao, Hai
    Jin, Qing
    Cai, Yongping
    Lin, Yi
    PLOS ONE, 2019, 14 (02):
  • [33] Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear
    Wang, Guoming
    Qi, Kaijie
    Gao, Xin
    Guo, Lei
    Cao, Peng
    Li, Qionghou
    Qiao, Xin
    Gu, Chao
    Zhang, Shaoling
    BMC GENOMICS, 2022, 23 (01)
  • [34] Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear
    Guoming Wang
    Kaijie Qi
    Xin Gao
    Lei Guo
    Peng Cao
    Qionghou Li
    Xin Qiao
    Chao Gu
    Shaoling Zhang
    BMC Genomics, 23
  • [35] CAD Genes: Genome-Wide Identification, Evolution, and Their Contribution to Lignin Biosynthesis in Pear (Pyrus bretschneideri)
    Qi, Kaijie
    Song, Xiaofei
    Yuan, Yazhou
    Bao, Jianping
    Gong, Xin
    Huang, Xiaosan
    Khanizadeh, Shahrokh
    Zhang, Shaoling
    Tao, Shutian
    PLANTS-BASEL, 2021, 10 (07):
  • [36] Comprehensive genomic analysis of the RNase T2 gene family in Rosaceae and expression analysis in Pyrus bretschneideri
    Xiaoxuan Zhu
    Qionghou Li
    Chao Tang
    Xin Qiao
    Kaijie Qi
    Peng Wang
    Shaoling Zhang
    Juyou Wu
    Plant Systematics and Evolution, 2020, 306
  • [37] Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)
    Xin Gong
    Liangyi Zhao
    Xiaofei Song
    Zekun Lin
    Bingjie Gu
    Jinxuan Yan
    Shaoling Zhang
    Shutian Tao
    Xiaosan Huang
    BMC Plant Biology, 19
  • [38] Genome-wide identification, expression analysis, and functional verification of the JMJ (Jumonji) histone demethylase gene family in pear (Pyrus bretchneideri)
    Khan, Waqar
    Liu, Weijuan
    Liu, Zhe
    Zhu, Xiaoxuan
    Wu, Juyou
    Wang, Peng
    TREE GENETICS & GENOMES, 2023, 19 (01)
  • [39] Genome-wide identification, expression analysis, and functional verification of the JMJ (Jumonji) histone demethylase gene family in pear (Pyrus bretchneideri)
    Waqar Khan
    Weijuan Liu
    Zhe Liu
    Xiaoxuan Zhu
    Juyou Wu
    Peng Wang
    Tree Genetics & Genomes, 2023, 19
  • [40] Genome-Wide Identification, Evolution, and Expression Analysis of the MAPK Gene Family in Rosaceae Plants
    Yang, Yongjuan
    Tang, Hao
    Huang, Yuchen
    Zheng, Yanyi
    Sun, Yuanyuan
    Wang, Qi
    HORTICULTURAE, 2023, 9 (12)