Classifying gene expression data of cancer using classifier ensemble with mutually exclusive features

被引:66
作者
Cho, SB [1 ]
Ryu, JW [1 ]
机构
[1] Yonsei Univ, Dept Comp Sci, Seoul 120749, South Korea
关键词
cancer classification; classifier ensemble with mutually exclusive features; gene expression classification; neural network ensemble classifier;
D O I
10.1109/JPROC.2002.804682
中图分类号
TM [电工技术]; TN [电子技术、通信技术];
学科分类号
0808 ; 0809 ;
摘要
The explosion of DNA and protein sequence data in public and private databases has been encouraging interdisciplinary research on biology and information technology. Gene expression profiles are just sequences of numbers, and the necessity of tools analyzing them to get useful information has risen significantly. In order to predict the cancer class of patients from the gene expression profile, this paper presents a classification framework that combines a pair of classifiers trained with mutually exclusive features. The idea behind feature selection with nonoverlapping correlation is to encourage classifier ensemble, which consists of multiple classifiers, to learn different aspects of training data, so that classifiers can search in a wide solution space. Experimental results show that the classifier ensemble produces higher recognition accuracy than conventional classifiers.
引用
收藏
页码:1744 / 1753
页数:10
相关论文
共 27 条
  • [1] Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    Alon, U
    Barkai, N
    Notterman, DA
    Gish, K
    Ybarra, S
    Mack, D
    Levine, AJ
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (12) : 6745 - 6750
  • [2] DEMOCRACY IN NEURAL NETS - VOTING SCHEMES FOR CLASSIFICATION
    BATTITI, R
    COLLA, AM
    [J]. NEURAL NETWORKS, 1994, 7 (04) : 691 - 707
  • [3] BEALE HD, 1996, NEURAL NETWORK DESIG, V11, P1
  • [4] Tissue classification with gene expression profiles
    Ben-Dor, A
    Bruhn, L
    Friedman, N
    Nachman, I
    Schummer, M
    Yakhini, Z
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2000, 7 (3-4) : 559 - 583
  • [5] Exploring the metabolic and genetic control of gene expression on a genomic scale
    DeRisi, JL
    Iyer, VR
    Brown, PO
    [J]. SCIENCE, 1997, 278 (5338) : 680 - 686
  • [6] DUDOIT S, 2000, 576 U CAL BERK DEP S
  • [7] Cluster analysis and display of genome-wide expression patterns
    Eisen, MB
    Spellman, PT
    Brown, PO
    Botstein, D
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (25) : 14863 - 14868
  • [8] Support vector machine classification and validation of cancer tissue samples using microarray expression data
    Furey, TS
    Cristianini, N
    Duffy, N
    Bednarski, DW
    Schummer, M
    Haussler, D
    [J]. BIOINFORMATICS, 2000, 16 (10) : 906 - 914
  • [9] Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    Golub, TR
    Slonim, DK
    Tamayo, P
    Huard, C
    Gaasenbeek, M
    Mesirov, JP
    Coller, H
    Loh, ML
    Downing, JR
    Caligiuri, MA
    Bloomfield, CD
    Lander, ES
    [J]. SCIENCE, 1999, 286 (5439) : 531 - 537
  • [10] Mixture of experts for classification of gender, ethnic origin, and pose of human faces
    Gutta, S
    Huang, JRJ
    Jonathon, P
    Wechsler, H
    [J]. IEEE TRANSACTIONS ON NEURAL NETWORKS, 2000, 11 (04): : 948 - 960