Draft genome sequence of Paenibacillus sp. strain A2

被引:3
|
作者
Zheng, Beiwen [1 ]
Zhang, Fan [2 ]
Dong, Hao [3 ]
Chai, Lujun [2 ]
Shu, Fuchang [3 ]
Yi, Shaojin [3 ]
Wang, Zhengliang [3 ]
Cui, Qingfeng [4 ]
Dong, Hanping [4 ]
Zhang, Zhongzhi [5 ]
Hou, Dujie [2 ]
Yang, Jinshui [6 ]
She, Yuehui [3 ]
机构
[1] Zhejiang Univ, Collaborat Innovat Ctr Diag & Treatment Infect Di, State Key Lab Diag & Treatment Infect Dis, Coll Med,Affiliated Hosp 1, Hangzhou 310003, Zhejiang, Peoples R China
[2] China Univ Geosci, Sch Energy Resources, Key Lab Marine Reservoir Evolut & Hydrocarbon Acc, Beijing, Peoples R China
[3] Yangtze Univ, Coll Chem & Environm Engn, Jingzhou, Peoples R China
[4] Chinese Acad Sci, Inst Porous Flow & Fluid Mech, Langfang, Peoples R China
[5] China Univ Petr, State Key Lab Heavy Oil Proc, Beijing, Peoples R China
[6] China Agr Univ, Coll Life Sci, Beijing 100094, Peoples R China
来源
STANDARDS IN GENOMIC SCIENCES | 2016年 / 11卷
基金
中国国家自然科学基金;
关键词
Paenibacillus sp strain A2; Genome; Hiseq2000; Sulfonate biodegradation; COG DATABASE; SP NOV; GENES; ANNOTATION; BACTERIA; PROPOSAL; TOOL;
D O I
10.1186/s40793-015-0125-7
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Paenibacillus sp. strain A2 is a Gram-negative rod-shaped bacterium isolated from a mixture of formation water and petroleum in Daqing oilfield, China. This facultative aerobic bacterium was found to have a broad capacity for metabolizing hydrocarbon and organosulfur compounds, which are the main reasons for the interest in sequencing its genome. Here we describe the features of Paenibacillus sp. strain A2, together with the genome sequence and its annotation. The 7,650,246 bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 54.2 % and contains 7575 protein-coding and 49 RNA genes, including 3 rRNA genes. One putative alkane monooxygenase, one putative alkanesulfonate monooxygenase, one putative alkanesulfonate transporter and four putative sulfate transporters were found in the draft genome.
引用
收藏
页数:9
相关论文
共 50 条
  • [1] Draft genome sequence of Paenibacillus sp. strain A2
    Beiwen Zheng
    Fan Zhang
    Hao Dong
    Lujun Chai
    Fuchang Shu
    Shaojin Yi
    Zhengliang Wang
    Qingfeng Cui
    Hanping Dong
    Zhongzhi Zhang
    Dujie Hou
    Jinshui Yang
    Yuehui She
    Standards in Genomic Sciences, 11
  • [2] Draft genome sequence of Paenibacillus algorifonticola sp. nov., an antimicrobial-producing strain
    Zhu, Liying
    Wu, Qian
    Xu, Qing
    Xu, Xian
    Jiang, Ling
    Huang, He
    GENOMICS DATA, 2015, 5 : 302 - 308
  • [3] Complete genome sequence of Paenibacillus sp. strain JDR-2
    Chow, Virginia
    Nong, Guang
    St John, Franz J.
    Rice, John D.
    Dickstein, Ellen
    Chertkov, Olga
    Bruce, David
    Detter, Chris
    Brettin, Thomas
    Han, James
    Woyke, Tanja
    Pitluck, Sam
    Nolan, Matt
    Pati, Amrita
    Martin, Joel
    Copeland, Alex
    Land, Miriam L.
    Goodwin, Lynne
    Jones, Jeffrey B.
    Ingram, Lonnie O.
    Shanmugam, Keelnathan T.
    Preston, James F.
    STANDARDS IN GENOMIC SCIENCES, 2012, 6 (01): : 1 - 10
  • [4] Complete genome sequence of Paenibacillus sp. strain JDR-2
    Virginia Chow
    Guang Nong
    Franz J. St. John
    John D. Rice
    Ellen Dickstein
    Olga Chertkov
    David Bruce
    Chris Detter
    Thomas Brettin
    James Han
    Tanja Woyke
    Sam Pitluck
    Matt Nolan
    Amrita Pati
    Joel Martin
    Alex Copeland
    Miriam L. Land
    Lynne Goodwin
    Jeffrey B. Jones
    Lonnie O. Ingram
    Keelnathan T. Shanmugam
    James F. Preston
    Standards in Genomic Sciences, 2012, 6 : 1 - 10
  • [5] Draft Genome Sequence of Paenibacillus sp. Strain OT2-17, a Triclosan-Degrading Rhizobacterium
    Garcia, Ashley M.
    Carlo, Priscilla P.
    Mendez, Monica O.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (16):
  • [6] Draft Genome Sequence of the Efficient Bioflocculant-Producing Bacterium Paenibacillus sp. Strain A9
    Jiang, Bin-hui
    Liu, Jin-liang
    Hu, Xiao-min
    GENOME ANNOUNCEMENTS, 2013, 1 (02)
  • [7] Draft Genome Sequence of the Endophyte Paenibacillus sp. Strain GM2FR Isolated from Festuca rubra
    Wemheuer, Franziska
    Wemheuer, Bernd
    Hollensteiner, Jacqueline
    Daniel, Rolf
    Poehlein, Anja
    GENOME ANNOUNCEMENTS, 2018, 6 (06)
  • [8] Draft Genome Sequence of Paenibacillus sp. Strain DMB5, Acclimatized and Enriched for Catabolizing Anthropogenic Compounds
    Johnson, Jenny
    Shah, Binal
    Jain, Kunal
    Parmar, Nidhi
    Hinsu, Ankit
    Patel, Namrata
    Joshi, Chaitanya G.
    Madamwar, Datta
    GENOME ANNOUNCEMENTS, 2016, 4 (02)
  • [9] Draft Genome Sequence of Pseudoalteromonas sp. Strain A2, an Isolate with High Antioxidative Activity from Arctic Seawater
    Lin, Xuezheng
    Wang, Zhen
    Li, Yang
    GENOME ANNOUNCEMENTS, 2014, 2 (05)
  • [10] Draft Genome Sequence of Serratia grimesii Strain A2
    Mardanova, Ayslu M.
    Toymentseva, Anna A.
    Gilyazeva, Adeliya G.
    Kazakov, Sergey V.
    Shagimardanova, Elena I.
    Khaitlina, Sofia Yu
    Sharipova, Margarita R.
    GENOME ANNOUNCEMENTS, 2014, 2 (05)