Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments

被引:186
作者
Mazhar, Sohaib H. [1 ,8 ]
Li, Xuanji [2 ]
Rashid, Azhar [3 ]
Su, JunMing [1 ]
Xu, Junqiang [1 ]
Brejnrod, Asker Daniel [4 ]
Su, Jian-Qiang [5 ]
Wu, Yijian [6 ]
Zhu, Yong-Guan [5 ,7 ]
Zhou, Shun Gui [8 ]
Feng, Renwei [1 ]
Rensing, Christopher [1 ,5 ,8 ]
机构
[1] Fujian Agr & Forestry Univ, Coll Agr Resources & Environm, Inst Environm Microbiol, Fuzhou, Peoples R China
[2] Univ Copenhagen, Sect Microbiol, Copenhagen, Denmark
[3] Nucl Inst Food & Agr PAEC, Peshawar 25000, Pakistan
[4] Univ Calif San Diego, Skaggs Sch Pharm, La Jolla, CA 92093 USA
[5] Chinese Acad Sci, Inst Urban Environm, Key Lab Urban Environm & Hlth, 1799 Jimei Rd, Xiamen 361021, Peoples R China
[6] Fujian Agr & Forestry Univ, Coll Anim Sci, Fuzhou 350002, Peoples R China
[7] Chinese Acad Sci, Res Ctr Ecoenvironm Sci, State Key Lab Urban & Reg Ecol, Beijing 100085, Peoples R China
[8] Fujian Agr & Forestry Univ, Coll Resources & Environm, Fujian Prov Key Lab Soil & Environm Hlth & Regula, Fuzhou, Peoples R China
基金
中国国家自然科学基金;
关键词
Co-selection; ARGs; Horizontal gene transfer; Heavy metals; Integrase; Transposons; BACTERIAL COMMUNITIES; RESISTOME; FEED; ANTIMICROBIALS; MANURES; FATE;
D O I
10.1016/j.scitotenv.2020.142702
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Environmental selection of antibiotic resistance genes (ARGs) is considered to be caused by antibiotic or metal residues, frequently used in livestock. In this study we examined three commercial poultry farms to correlate the co-occurrence patterns of antibiotic and metal residues to the presence of ARGs. We quantified 283 ARGs, 12 mobile genetic elements (MGEs), 49 targeted antibiotics, 7 heavy metals and sequenced 16S rRNA genes. The abundance and type of ARG were significantly enriched in manure while soil harbored the most diverse bacterial community. Procrustes analysis displayed significant correlations between ARGs/MGEs and the microbiome. Cadmium (Cd), arsenic (As), zinc (Zn), copper (Cu) and lead (Pb) were responsible for a majority of positive correlations to ARGs when compared to antibiotics. Integrons and transposons co-occurred with ARGs corresponding to 9 classes of antibiotics, especially Class1 integrase intI-1LC. Redundancy analysis (RDA) and Variance partitioning analysis (VPA) showed that antibiotics, metals, MGEs and bacteria explain solely 0.7%, 5.7%, 12.4%, and 21.9% of variances of ARGs in the microbial community, respectively. These results suggested that bacterial composition and horizontal gene transfer were the major factors shaping the composition of ARGs; Metals had a bigger effect on ARG profile than detected antibiotics in this study. (C) 2020 Elsevier B.V. All rights reserved.
引用
收藏
页数:10
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