A mathematical model of ctDNA shedding predicts tumor detection size

被引:125
作者
Avanzini, Stefano [1 ]
Kurtz, David M. [2 ]
Chabon, Jacob J. [3 ,4 ]
Moding, Everett J. [4 ,5 ]
Hori, Sharon Seiko [1 ,6 ]
Gambhir, Sanjiv Sam [1 ,4 ,6 ,7 ,8 ,9 ]
Alizadeh, Ash A. [2 ,3 ,4 ]
Diehn, Maximilian [3 ,4 ,5 ]
Reiter, Johannes G. [1 ,4 ,7 ,10 ]
机构
[1] Stanford Univ, Canary Ctr Canc Early Detect, Dept Radiol, Sch Med, Palo Alto, CA 94304 USA
[2] Stanford Univ, Dept Med, Div Oncol, Div Hematol,Sch Med, Stanford, CA 94305 USA
[3] Stanford Univ, Inst Stem Cell Biol & Regenerat Med, Sch Med, Stanford, CA 94305 USA
[4] Stanford Univ, Stanford Canc Inst, Sch Med, Stanford, CA 94305 USA
[5] Stanford Univ, Dept Radiat Oncol, Sch Med, Stanford, CA 94305 USA
[6] Stanford Univ, Dept Radiol, Mol Imaging Program Stanford, Sch Med, Stanford, CA 94305 USA
[7] Stanford Univ, BioX Program, Stanford, CA 94305 USA
[8] Stanford Univ, Dept Bioengn, Sch Med, Palo Alto, CA 94305 USA
[9] Stanford Univ, Dept Mat Sci & Engn, Sch Med, Palo Alto, CA 94305 USA
[10] Stanford Univ, Dept Biomed Data Sci, Biophys Program, Stanford, CA 94305 USA
关键词
LUNG-CANCER; DNA; CHALLENGE; MUTATION;
D O I
10.1126/sciadv.abc4308
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Early cancer detection aims to find tumors before they progress to an incurable stage. To determine the potential of circulating tumor DNA (ctDNA) for cancer detection, we developed a mathematical model of tumor evolution and ctDNA shedding to predict the size at which tumors become detectable. From 176 patients with stage Ito III lung cancer, we inferred that, on average, 0.014% of a tumor cell's DNA is shed into the bloodstream per cell death. For annual screening, the model predicts median detection sizes of 2.0 to 2.3 cm representing a similar to 40% decrease from the current median detection size of 3.5 cm. For informed monthly cancer relapse testing, the model predicts a median detection size of 0.83 cm and suggests that treatment failure can be detected 140 days earlier than with imaging-based approaches. This mechanistic framework can help accelerate clinical trials by precomputing the most promising cancer early detection strategies.
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页数:9
相关论文
共 62 条
[1]   Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution [J].
Abbosh, Christopher ;
Birkbak, Nicolai J. ;
Wilson, Gareth A. ;
Jamal-Hanjani, Mariam ;
Constantin, Tudor ;
Salari, Raheleh ;
Le Quesne, John ;
Moore, David A. ;
Veeriah, Selvaraju ;
Rosenthal, Rachel ;
Marafioti, Teresa ;
Kirkizlar, Eser ;
Watkins, Thomas B. K. ;
McGranahan, Nicholas ;
Ward, Sophia ;
Martinson, Luke ;
Riley, Joan ;
Fraioli, Francesco ;
Al Bakir, Maise ;
Gronroos, Eva ;
Zambrana, Francisco ;
Endozo, Raymondo ;
Bi, Wenya Linda ;
Fennessy, Fiona M. ;
Sponer, Nicole ;
Johnson, Diana ;
Laycock, Joanne ;
Shafi, Seema ;
Czyzewska-Khan, Justyna ;
Rowan, Andrew ;
Chambers, Tim ;
Matthews, Nik ;
Turajlic, Samra ;
Hiley, Crispin ;
Lee, Siow Ming ;
Forster, Martin D. ;
Ahmad, Tanya ;
Falzon, Mary ;
Borg, Elaine ;
Lawrence, David ;
Hayward, Martin ;
Kolvekar, Shyam ;
Panagiotopoulos, Nikolaos ;
Janes, Sam M. ;
Thakrar, Ricky ;
Ahmed, Asia ;
Blackhall, Fiona ;
Summers, Yvonne ;
Hafez, Dina ;
Naik, Ashwini .
NATURE, 2017, 545 (7655) :446-+
[2]   Reduced Lung-Cancer Mortality with Low-Dose Computed Tomographic Screening [J].
Aberle, Denise R. ;
Adams, Amanda M. ;
Berg, Christine D. ;
Black, William C. ;
Clapp, Jonathan D. ;
Fagerstrom, Richard M. ;
Gareen, Ilana F. ;
Gatsonis, Constantine ;
Marcus, Pamela M. ;
Sicks, JoRean D. .
NEW ENGLAND JOURNAL OF MEDICINE, 2011, 365 (05) :395-409
[3]  
Abramowitz M., 1964, APPL MATH SERIES
[4]  
Allen L., 2011, An Introduction to Stochastic Processes with Applications to Biology
[5]   The mathematics of cancer: integrating quantitative models [J].
Altrock, Philipp M. ;
Liu, Lin L. ;
Michor, Franziska .
NATURE REVIEWS CANCER, 2015, 15 (12) :730-745
[6]  
[Anonymous], 2018, SURV EP END RES SEER
[7]   Exact solution of a two-type branching process: models of tumor progression [J].
Antal, Tibor ;
Krapivsky, P. L. .
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2011,
[8]   Exact solution of a two-type branching process: clone size distribution in cell division kinetics [J].
Antal, Tibor ;
Krapivsky, P. L. .
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2010,
[9]  
Athreya K.B., 2004, Branching processes
[10]   Cancer Evolution: Mathematical Models and Computational Inference [J].
Beerenwinkel, Niko ;
Schwarz, Roland F. ;
Gerstung, Moritz ;
Markowetz, Florian .
SYSTEMATIC BIOLOGY, 2015, 64 (01) :E1-E25