Panel strain of Klebsiella pneumoniae for beta-lactam antibiotic evaluation: their phenotypic and genotypic characterization

被引:20
作者
Dsouza, Roshan [1 ,2 ]
Pinto, Naina Adren [1 ,2 ,3 ]
Hwang, InSik [1 ,2 ,3 ]
Cho, YoungLag [4 ]
Yong, Dongeun [1 ,2 ]
Choi, Jongrak [1 ,2 ]
Lee, Kyungwon [1 ,2 ]
Chong, Yunsop [1 ,2 ]
机构
[1] Yonsei Univ, Coll Med, Dept Lab Med, Seoul, South Korea
[2] Yonsei Univ, Coll Med, Res Inst Bacterial Resistance, Seoul, South Korea
[3] Yonsei Univ, Brain Korea PLUS Project Med Sci 21, Seoul, South Korea
[4] LegoChemBioScience Inc, Daejeon, South Korea
关键词
Whole genome sequencing; Panel strain; Klebsiella pneumoniae; Antibiotic evaluation; MULTIDRUG EFFLUX PUMP; PSEUDOMONAS-AERUGINOSA; ESCHERICHIA-COLI; GENOME SEQUENCE; RESISTANCE; ENTEROBACTERIACEAE; SUSCEPTIBILITY; INFECTIONS; BACTEREMIA; EXPRESSION;
D O I
10.7717/peerj.2896
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Klebsiella pneumoniae is responsible for numerous infections caused in hospitals, leading to mortality and morbidity. It has been evolving as a multi-drug resistant pathogen, acquiring multiple resistances such as such as horizontal gene transfer, transposon-mediated insertions or change in outer membrane permeability. Therefore, constant efforts are being carried out to control the infections using various antibiotic therapies. Considering the severity of the acquired resistance, we developed a panel of strains of K. pneumoniae expressing different resistance profiles such as high-level penicillinase and AmpC production, extended spectrum beta-lactamases and carbapenemases. Bacterial strains expressing different resistance phenotypes were collected and examined for resistance genes, mutations and porin alterations contributing to the detected phenotypes. Using the Massive parallel sequencing (MPS) technology we have constructed and genotypically characterized the panel strains to elucidate the multidrug resistance. These panel strains can be used in the clinical laboratory as standard reference strains. In addition, these strains could be significant in the field of pharmaceuticals for the antibiotic drug testing to verify its efficiency on pathogens expressing various resistances.
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页数:15
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