A Block-matching based technique for the analysis of 2D gel images

被引:1
作者
Freire, Ana [1 ,4 ]
Seoane, Jose A. [1 ,4 ]
Rodriguez, Alvaro [1 ,4 ]
Ruiz-Romero, Cristina [2 ,4 ]
Lopez-Campos, Guillermo [3 ]
Dorado, Julian [1 ,4 ]
机构
[1] Univ A Coruna, Fac Comp Sci, Informat & Commun Technol Dept, La Coruna, Spain
[2] CHUAC, La Coruna, Spain
[3] Inst Hlth Carlos III, Bioinformat & Publ Hlth Unit, Madrid, Spain
[4] Biomed Res Inst A Coruna INIBIC, La Coruna, Spain
来源
MEDINFO 2010, PTS I AND II | 2010年 / 160卷
关键词
2-D gel electrophoresis; Block-matching; Proteomics; Computer-assisted image processing; 2-DIMENSIONAL ELECTROPHORESIS; REGISTRATION; PROTEOMICS; ALIGNMENT;
D O I
10.3233/978-1-60750-588-4-1282
中图分类号
R19 [保健组织与事业(卫生事业管理)];
学科分类号
摘要
Research at protein level is a useful practice in personalized medicine. More specifically, 2D gel images obtained after electrophoresis process can lead to an accurate diagnosis. Several computational approaches try to help the clinicians to establish the correspondence between pairs of proteins of multiple 2D gel images. Most of them perform the alignment of a patient image referred to a reference image. In this work, an approach based on block-matching techniques is developed. Its main characteristic is that it does not need to perform the whole alignment between two images considering each protein separately. A comparison with other published methods is presented. It can be concluded that this method works over broad range of proteomic images, although they have a high level of difficulty.
引用
收藏
页码:1282 / 1286
页数:5
相关论文
共 18 条
[1]  
Almansa A, 2007, ICCV 2007 WORKSH COM
[2]   A METHOD FOR REGISTRATION OF 3-D SHAPES [J].
BESL, PJ ;
MCKAY, ND .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 1992, 14 (02) :239-256
[3]   Automated image alignment for 2D gel electrophoresis in a high-throughput proteomics pipeline [J].
Dowsey, Andrew W. ;
Dunn, Michael J. ;
Yang, Guang-Zhong .
BIOINFORMATICS, 2008, 24 (07) :950-957
[4]   Examination of 2-DE in the Human Proteome Organisation Brain Proteome Project pilot studies with the new RAIN gel matching technique [J].
Dowsey, Andrew W. ;
English, Jane ;
Pennington, Kyla ;
Cotter, David ;
Stuehler, Kai ;
Marcus, Katrin ;
Meyer, Helmut E. ;
Dunn, Michael J. ;
Yang, Guang-Zhong .
PROTEOMICS, 2006, 6 (18) :5030-5047
[5]  
Görg A, 2000, ELECTROPHORESIS, V21, P1037, DOI 10.1002/(SICI)1522-2683(20000401)21:6<1037::AID-ELPS1037>3.0.CO
[6]  
2-V
[7]  
Kaczmarek K, 2002, J CHEM INF COMP SCI, V42, P1431, DOI [10.1021/ci020266k, 10.1021/ci020266K]
[8]  
Levenberg K, 1944, Q Appl Math, V2, P164, DOI [10.1090/QAM/10666, 10.1090/qam/10666, DOI 10.1090/QAM/10666, DOI 10.1090/QAM/1944-02-02]
[9]  
Peipner K, 1999, ELECTROPHORESIS, V20, P755
[10]   Robust and accurate registration of 2-d electrophoresis gels using point-matching [J].
Rogers, Mike ;
Graham, Jim .
IEEE TRANSACTIONS ON IMAGE PROCESSING, 2007, 16 (03) :624-635