RAC-CNN: multimodal deep learning based automatic detection and classification of rod and cone photoreceptors in adaptive optics scanning light ophthalmoscope images

被引:33
作者
Cunefare, David [1 ]
Huckenpahler, Alison L. [2 ]
Patterson, Emily J. [3 ]
Dubra, Alfredo [4 ]
Carroll, Joseph [2 ,3 ]
Farsiu, Sina [1 ,5 ]
机构
[1] Duke Univ, Dept Biomed Engn, Durham, NC 27708 USA
[2] Med Coll Wisconsin, Dept Cell Biol Neurobiol & Anat, Milwaukee, WI 53226 USA
[3] Med Coll Wisconsin, Dept Ophthalmol & Visual Sci, Milwaukee, WI 53226 USA
[4] Stanford Univ, Dept Ophthalmol, Palo Alto, CA 94303 USA
[5] Duke Univ, Med Ctr, Dept Ophthalmol, Durham, NC 27710 USA
来源
BIOMEDICAL OPTICS EXPRESS | 2019年 / 10卷 / 08期
基金
美国国家卫生研究院;
关键词
COHERENCE TOMOGRAPHY IMAGES; DIABETIC-RETINOPATHY; RETINAL VASCULATURE; HIGH-RESOLUTION; GANGLION-CELLS; GRAPH-THEORY; SEGMENTATION; IDENTIFICATION; LAYER; REPEATABILITY;
D O I
10.1364/BOE.10.003815
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Quantification of the human rod and cone photoreceptor mosaic in adaptive optics scanning light ophthalmoscope (AOSLO) images is useful for the study of various retinal pathologies. Subjective and time-consuming manual grading has remained the gold standard for evaluating these images, with no well validated automatic methods for detecting individual rods having been developed. We present a novel deep learning based automatic method, called the rod and cone CNN (RAC-CNN), for detecting and classifying rods and cones in multimodal AOSLO images. We test our method on images from healthy subjects as well as subjects with achromatopsia Over a range of retinal eccentricities. We show that our method is on par with human grading for detecting rods and cones. (C) 2019 Optical Society of America under the terms of the OSA Open Access Publishing Agreement
引用
收藏
页码:3815 / 3832
页数:18
相关论文
共 81 条
  • [11] Deep learning based detection of cone photoreceptors with multimodal adaptive optics scanning light ophthalmoscope images of achromatopsia
    Cunefare, David
    Langlo, Christopher S.
    Patterson, Emily J.
    Blau, Sarah
    Dubra, Alfredo
    Carroll, Joseph
    Farsiu, Sina
    [J]. BIOMEDICAL OPTICS EXPRESS, 2018, 9 (08): : 3740 - 3756
  • [12] Open source software for automatic detection of cone photoreceptors in adaptive optics ophthalmoscopy using convolutional neural networks
    Cunefare, David
    Fang, Leyuan
    Cooper, Robert F.
    Dubra, Alfredo
    Carroll, Joseph
    Farsiu, Sina
    [J]. SCIENTIFIC REPORTS, 2017, 7
  • [13] Automatic detection of cone photoreceptors in split detector adaptive optics scanning light ophthalmoscope images
    Cunefare, David
    Cooper, Robert F.
    Higgins, Brian
    Katz, David F.
    Dubra, Alfredo
    Carroll, Joseph
    Farsiu, Sina
    [J]. BIOMEDICAL OPTICS EXPRESS, 2016, 7 (05): : 2036 - 2050
  • [14] HUMAN PHOTORECEPTOR TOPOGRAPHY
    CURCIO, CA
    SLOAN, KR
    KALINA, RE
    HENDRICKSON, AE
    [J]. JOURNAL OF COMPARATIVE NEUROLOGY, 1990, 292 (04) : 497 - 523
  • [15] Automatic Cone Photoreceptor Localisation in Healthy and Stargardt Afflicted Retinas Using Deep Learning
    Davidson, Benjamin
    Kalitzeos, Angelos
    Carroll, Joseph
    Dubra, Alfredo
    Ourselin, Sebastien
    Michaelides, Michel
    Bergeles, Christos
    [J]. SCIENTIFIC REPORTS, 2018, 8
  • [16] Open-source, machine and deep learning-based automated algorithm for gestational age estimation through smartphone lens imaging
    Desai, Arjun D.
    Peng, Chunlei
    Fang, Leyuan
    Mukherjee, Dibyendu
    Yeung, Andrew
    Jaffe, Stephanie J.
    Griffin, Jennifer B.
    Farsiu, Sina
    [J]. BIOMEDICAL OPTICS EXPRESS, 2018, 9 (12): : 6038 - 6052
  • [17] MEASURES OF THE AMOUNT OF ECOLOGIC ASSOCIATION BETWEEN SPECIES
    DICE, LR
    [J]. ECOLOGY, 1945, 26 (03) : 297 - 302
  • [18] Handheld adaptive optics scanning laser ophthalmoscope
    DuBose, Theodore
    Nankivil, Derek
    LaRocca, Francesco
    Waterman, Gar
    Hagan, Kristen
    Polans, James
    Keller, Brenton
    Du Tran-Viet
    Vajzovic, Lejla
    Kuo, Anthony N.
    Toth, Cynthia A.
    Izatt, Joseph A.
    Farsiu, Sina
    [J]. OPTICA, 2018, 5 (09): : 1027 - 1036
  • [19] Super-resolution retinal imaging using optically reassigned scanning laser ophthalmoscopy
    DuBose, Theodore B.
    LaRocca, Francesco
    Farsiu, Sina
    Izatt, Joseph A.
    [J]. NATURE PHOTONICS, 2019, 13 (04) : 257 - +
  • [20] Noninvasive imaging of the human rod photoreceptor mosaic using a confocal adaptive optics scanning ophthalmoscope
    Dubra, Alfredo
    Sulai, Yusufu
    Norris, Jennifer L.
    Cooper, Robert F.
    Dubis, Adam M.
    Williams, David R.
    Carroll, Joseph
    [J]. BIOMEDICAL OPTICS EXPRESS, 2011, 2 (07): : 1864 - 1876