Imaging transcriptional dynamics

被引:14
作者
Lim, Bomyi [1 ]
机构
[1] Univ Penn, Dept Chem & Biomol Engn, Philadelphia, PA 19104 USA
基金
美国国家卫生研究院;
关键词
RNA-POLYMERASE-II; GENE-EXPRESSION; LIVE-CELL; FLUOROPHORES; LOCALIZATION; ELONGATION; BINDING;
D O I
10.1016/j.copbio.2018.02.008
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Recent advances in imaging techniques have enabled visualizations of nascent transcripts or individual protein molecules at high spatiotemporal resolution, revealing the complex nature of transcriptional regulation. Here, we highlight recent studies that have provided comprehensive insights to transcriptional dynamics using such quantitative imaging techniques. Specifically, they demonstrated that transcriptional activity is stochastic, and such transcriptional bursting is modulated by multiple components like chromatin environments, concentration of transcription factors, and enhancer-promoter interactions. Moreover, recent studies suggested that regulation of transcriptional activity is more complex than previously thought, by showing that transcription factors and RNA polymerases also move within the cell with distinct kinetics and sometimes form dynamic clusters to mediate transcriptional initiation.
引用
收藏
页码:49 / 55
页数:7
相关论文
共 55 条
[1]   Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency [J].
Abranches, Elsa ;
Guedes, Ana M. V. ;
Moravec, Martin ;
Maamar, Hedia ;
Svoboda, Petr ;
Raj, Arjun ;
Henrique, Domingos .
DEVELOPMENT, 2014, 141 (14) :2770-2779
[2]   Generation of Single-Cell Transcript Variability by Repression [J].
Antolovic, Vlatka ;
Miermont, Agnes ;
Corrigan, Adam M. ;
Chubb, Jonathan R. .
CURRENT BIOLOGY, 2017, 27 (12) :1811-+
[3]   Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping [J].
Bartman, Caroline R. ;
Hsu, Sarah C. ;
Hsiung, Chris C. -S. ;
Raj, Arjun ;
Blobel, Gerd A. .
MOLECULAR CELL, 2016, 62 (02) :237-247
[4]   Localization of ASH1 mRNA particles in living yeast [J].
Bertrand, E ;
Chartrand, P ;
Schaefer, M ;
Shenoy, SM ;
Singer, RH ;
Long, RM .
MOLECULAR CELL, 1998, 2 (04) :437-445
[5]   Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos [J].
Bothma, Jacques P. ;
Garcia, Hernan G. ;
Esposito, Emilia ;
Schlissel, Gavin ;
Gregor, Thomas ;
Levine, Michael .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (29) :10598-10603
[6]   Dynamic visualization of transcription and RNA subcellular localization in zebrafish [J].
Campbell, Philip D. ;
Chao, Jeffrey A. ;
Singer, Robert H. ;
Marlow, Florence L. .
DEVELOPMENT, 2015, 142 (07) :1368-1374
[7]   Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution [J].
Chen, Bi-Chang ;
Legant, Wesley R. ;
Wang, Kai ;
Shao, Lin ;
Milkie, Daniel E. ;
Davidson, Michael W. ;
Janetopoulos, Chris ;
Wu, Xufeng S. ;
Hammer, John A., III ;
Liu, Zhe ;
English, Brian P. ;
Mimori-Kiyosue, Yuko ;
Romero, Daniel P. ;
Ritter, Alex T. ;
Lippincott-Schwartz, Jennifer ;
Fritz-Laylin, Lillian ;
Mullins, R. Dyche ;
Mitchell, Diana M. ;
Bembenek, Joshua N. ;
Reymann, Anne-Cecile ;
Boehme, Ralph ;
Grill, Stephan W. ;
Wang, Jennifer T. ;
Seydoux, Geraldine ;
Tulu, U. Serdar ;
Kiehart, Daniel P. ;
Betzig, Eric .
SCIENCE, 2014, 346 (6208) :439-+
[8]   Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells [J].
Chen, Jiji ;
Zhang, Zhengjian ;
Li, Li ;
Chen, Bi-Chang ;
Revyakin, Andrey ;
Hajj, Bassam ;
Legant, Wesley ;
Dahan, Maxime ;
Lionnet, Timothee ;
Betzig, Eric ;
Tjian, Robert ;
Liu, Zhe .
CELL, 2014, 156 (06) :1274-1285
[9]   Super-resolution imaging of fluorescently labeled, endogenous RNA Polymerase II in living cells with CRISPR/Cas9-mediated gene editing [J].
Cho, Won-Ki ;
Jayanth, Namrata ;
Mullen, Susan ;
Tan, Tzer Han ;
Jung, Yoon J. ;
Cisse, Ibrahim I. .
SCIENTIFIC REPORTS, 2016, 6
[10]   RNA Polymerase II cluster dynamics predict mRNA output in living cells [J].
Cho, Won-Ki ;
Jayanth, Namrata ;
English, Brian P. ;
Inoue, Takuma ;
Andrews, J. Owen ;
Conway, William ;
Grimm, Jonathan B. ;
Spille, Jan-Hendrik ;
Lavis, Luke D. ;
Lionnet, Timothee ;
Cisse, Ibrahim I. .
ELIFE, 2016, 5