Characterization of the complete mitochondrial genome of Helice latimera and its phylogenetic implications in Brachyura

被引:7
|
作者
Tang, Ying-Yu [1 ,2 ,4 ]
Tang, Bo-Ping [1 ]
Xin, Zhao-Zhe [1 ]
Li, Yue-Tian [1 ,3 ]
Zha, Xiao-Han [1 ]
Zhang, Dai-Zhen [1 ]
Sun, Yue [1 ]
Liu, Qiu-Ning [1 ]
Ma, Yun-Fei [2 ]
机构
[1] Yancheng Teachers Univ, Jiangsu Prov Key Lab Coastal Wetland Bioresources, Jiangsu Synthet Innovat Ctr Coastal Bioagr, Jiangsu Key Lab Bioresources Saline Soils,Sch Wet, Yancheng 224007, Peoples R China
[2] Wenzhou Med Univ, Sch Pharmaceut Sci, Wenzhou 325035, Peoples R China
[3] Shanghai Ocean Univ, Coll Aquaculture & Life Sci, Key Lab Explorat & Utilizat Aquat Genet Resources, Shanghai 201306, Peoples R China
[4] Nanjing Univ Technol, Coll Biotechnol & Pharmaceut Engn, Nanjing 210009, Peoples R China
基金
中国博士后科学基金; 中国国家自然科学基金;
关键词
Helice latimera; Mitochondrial genome; Phylogenetic analysis; Brachyura; Gene rearrangement; ANTHERAEA-PERNYI LEPIDOPTERA; GENE REARRANGEMENTS; CRUSTACEA-DECAPODA; GRAPSOIDEA VARUNIDAE; CRABS CRUSTACEA; SEQUENCE; MODEL; EVOLUTION;
D O I
10.1016/j.ygeno.2020.08.013
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Mitochondrial genomes (mitogenomes) help advance our learning of molecular evolution and phylogenetic relationships. The mitogenome of H. latimera is 16,246 bp in length, which typically contains 37 animal mitogenome genes consisting of 13 protein-coding genes (PCGs), two rRNA genes, and 22 tRNA genes, as well as a control region. The AT content of H. latimera is 69.1%. The A + T skew of the mitogenome of H. latimera was slightly negative (-0.017). The size of Thirteen PCGs is from 162 bp to 1731 bp. Twenty-two tRNA genes ranged from 62 to 73 bp and were highly A + T biased. All tRNA genes owed a typical cloverleaf structure, not including the trnS1 gene lacking a dihydroxyuridine arm. One PCG, two rRNAs, and 12 of the tRNAs were rearranged compared to the pancrustacean gene order. Phylogenetic analysis revealed the locationt of H. latimera among the Varunidae family.
引用
收藏
页码:5180 / 5187
页数:8
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