Characterization of the complete mitochondrial genome of Helice latimera and its phylogenetic implications in Brachyura

被引:7
|
作者
Tang, Ying-Yu [1 ,2 ,4 ]
Tang, Bo-Ping [1 ]
Xin, Zhao-Zhe [1 ]
Li, Yue-Tian [1 ,3 ]
Zha, Xiao-Han [1 ]
Zhang, Dai-Zhen [1 ]
Sun, Yue [1 ]
Liu, Qiu-Ning [1 ]
Ma, Yun-Fei [2 ]
机构
[1] Yancheng Teachers Univ, Jiangsu Prov Key Lab Coastal Wetland Bioresources, Jiangsu Synthet Innovat Ctr Coastal Bioagr, Jiangsu Key Lab Bioresources Saline Soils,Sch Wet, Yancheng 224007, Peoples R China
[2] Wenzhou Med Univ, Sch Pharmaceut Sci, Wenzhou 325035, Peoples R China
[3] Shanghai Ocean Univ, Coll Aquaculture & Life Sci, Key Lab Explorat & Utilizat Aquat Genet Resources, Shanghai 201306, Peoples R China
[4] Nanjing Univ Technol, Coll Biotechnol & Pharmaceut Engn, Nanjing 210009, Peoples R China
基金
中国博士后科学基金; 中国国家自然科学基金;
关键词
Helice latimera; Mitochondrial genome; Phylogenetic analysis; Brachyura; Gene rearrangement; ANTHERAEA-PERNYI LEPIDOPTERA; GENE REARRANGEMENTS; CRUSTACEA-DECAPODA; GRAPSOIDEA VARUNIDAE; CRABS CRUSTACEA; SEQUENCE; MODEL; EVOLUTION;
D O I
10.1016/j.ygeno.2020.08.013
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Mitochondrial genomes (mitogenomes) help advance our learning of molecular evolution and phylogenetic relationships. The mitogenome of H. latimera is 16,246 bp in length, which typically contains 37 animal mitogenome genes consisting of 13 protein-coding genes (PCGs), two rRNA genes, and 22 tRNA genes, as well as a control region. The AT content of H. latimera is 69.1%. The A + T skew of the mitogenome of H. latimera was slightly negative (-0.017). The size of Thirteen PCGs is from 162 bp to 1731 bp. Twenty-two tRNA genes ranged from 62 to 73 bp and were highly A + T biased. All tRNA genes owed a typical cloverleaf structure, not including the trnS1 gene lacking a dihydroxyuridine arm. One PCG, two rRNAs, and 12 of the tRNAs were rearranged compared to the pancrustacean gene order. Phylogenetic analysis revealed the locationt of H. latimera among the Varunidae family.
引用
收藏
页码:5180 / 5187
页数:8
相关论文
共 50 条
  • [31] Complete mitochondrial genome of the ghost crab Ocypode stimpsoni Ortmann, 1897 (Brachyura: Decapoda: Ocypodidae) and its phylogenetic relationship in Brachyura
    Kim, Hanul
    Jung, Jongwoo
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1699 - 1700
  • [32] The complete mitochondrial genome of Hemigrapsus sinensis (Brachyura, Grapsoidea, Varunidae) and its phylogenetic position within Grapsoidea
    Jin, Xun
    Guo, Xingle
    Chen, Jian
    Li, Jiasheng
    Zhang, Shufei
    Zheng, Sixu
    Wang, Yunpeng
    Peng, Ying
    Zhang, Kun
    Liu, Yifan
    Liu, Bingjian
    GENES & GENOMICS, 2023, 45 (03) : 377 - 391
  • [33] The complete mitochondrial genome of Pardosa pusiola (Araneae, Lycosidae) and its phylogenetic implications
    Yi, Jiequn
    Liu, Min
    Liu, Jianbai
    Mao, Yongkai
    Lin, Mingjiang
    Xu, Hanliang
    An, Yuxing
    Wu, Han
    Li, Jihu
    ENTOMOLOGICAL RESEARCH, 2023, 53 (04) : 148 - 157
  • [34] Characterization and Phylogenetic Implications of the Complete Mitochondrial Genome of Syrphidae
    Li, Hu
    GENES, 2019, 10 (08)
  • [35] Characterization of the complete mitochondrial genome of Ixodes granulatus (Ixodidae) and its phylogenetic implications
    Xin-yan Lu
    Quan-fu Zhang
    Dan-dan Jiang
    Chun-hong Du
    Rong Xu
    Xian-guo Guo
    Xing Yang
    Parasitology Research, 2022, 121 : 2347 - 2358
  • [36] First Complete Mitochondrial Genome of Melyridae(Coleoptera, Cleroidea): Genome Description and Phylogenetic Implications
    Yuan, Lilan
    Ge, Xueying
    Xie, Guanglin
    Liu, Haoyu
    Yang, Yuxia
    INSECTS, 2021, 12 (02) : 1 - 13
  • [37] Characterization of the complete mitochondrial genome of Ixodes granulatus (Ixodidae) and its phylogenetic implications
    Lu, Xin-yan
    Zhang, Quan-fu
    Jiang, Dan-dan
    Du, Chun-hong
    Xu, Rong
    Guo, Xian-guo
    Yang, Xing
    PARASITOLOGY RESEARCH, 2022, 121 (08) : 2347 - 2358
  • [38] Characterization of the complete mitochondrial genome of Spilarctia robusta (Lepidoptera: Noctuoidea: Erebidae) and its phylogenetic implications
    Sun, Yu
    Tian, Sen
    Qian, Cen
    Sun, Yu-Xuan
    Abbas, Muhammad N.
    Kausar, Saima
    Wang, Lei
    Wei, Guoqing
    Zhu, Bao-Jian
    Liu, Chao-Liang
    EUROPEAN JOURNAL OF ENTOMOLOGY, 2016, 113 : 558 - 570
  • [39] Characterization of the Complete Mitochondrial Genome ofDrabescus ineffectusandRoxasellana stellata(Hemiptera: Cicadellidae: Deltocephalinae: Drabescini) and Their Phylogenetic Implications
    Xu, Deliang
    Yu, Tinghao
    Zhang, Yalin
    INSECTS, 2020, 11 (08) : 1 - 18
  • [40] Complete mitochondrial genome and phylogenetic analysis of Mancinella alouina
    Wang, Xumin
    Ren, Xiaoyu
    Teng, Xindong
    Feng, Chunyu
    Xing, Zhikai
    Wang, Shuang
    Zheng, Li
    Qu, Jiangyong
    Wang, Lijun
    MOLECULAR BIOLOGY REPORTS, 2024, 51 (01)