Could a Proto-Ribosome Emerge Spontaneously in the Prebiotic World?

被引:22
作者
Agmon, Ilana C. [1 ,2 ]
机构
[1] Technion Israel Inst Technol, Inst Adv Studies Theoret Chem, Schulich Fac Chem, IL-32000 Haifa, Israel
[2] Hebrew Univ Jerusalem, Fritz Haber Res Ctr Mol Dynam, IL-91904 Jerusalem, Israel
关键词
ribosome; proto-ribosome; ribosome symmetrical region; RNA world; origin of life; PEPTIDE-BOND FORMATION; TRANSFER-RNA; MITOCHONDRIAL RIBOSOME; TERTIARY INTERACTIONS; ANGSTROM RESOLUTION; GAAA TETRALOOP; EVOLUTION; DIMER; TRANSFERASE; SUBUNIT;
D O I
10.3390/molecules21121701
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
An indispensable prerequisite for establishing a scenario of life emerging by natural processes is the requirement that the first simple proto-molecules could have had a realistic probability of self-assembly from random molecular polymers in the prebiotic world. The vestige of the proto-ribosome, which is believed to be still embedded in the contemporary ribosome, is used to assess the feasibility of such spontaneous emergence. Three concentric structural elements of different magnitudes, having a dimeric nature derived from the symmetrical region of the ribosomal large subunit, were suggested to constitute the vestige of the proto-ribosome. It is assumed to have materialized spontaneously in the prebiotic world, catalyzing non-coded peptide bond formation and simple elongation. Probabilistic and energetic considerations are applied in order to evaluate the suitability of the three contenders for being the initial proto-ribosome. The analysis points to the simplest proto-ribosome, comprised of a dimer of tRNA-like molecules presently embedded in the core of the symmetrical region, as the only one having a realistic statistical likelihood of spontaneous emergence from random RNA chains. Hence it offers a feasible starting point for a continuous evolutionary path from the prebiotic matter, through natural processes, into the intricate modern translation system.
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页数:15
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共 48 条
[11]  
Bernhardt HS, 2012, BIOL DIRECT, V7, P13
[12]   A hierarchical model for evolution of 23S ribosomal RNA [J].
Bokov, Konstantin ;
Steinberg, Sergey V. .
NATURE, 2009, 457 (7232) :977-980
[13]   The Ribosome Challenge to the RNA World [J].
Bowman, Jessica C. ;
Hud, Nicholas V. ;
Williams, Loren Dean .
JOURNAL OF MOLECULAR EVOLUTION, 2015, 80 (3-4) :143-161
[14]   The Comparative RNA Web (CRW) Site:: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs -: art. no. 2 [J].
Cannone, JJ ;
Subramanian, S ;
Schnare, MN ;
Collett, JR ;
D'Souza, LM ;
Du, YS ;
Feng, B ;
Lin, N ;
Madabusi, LV ;
Müller, KM ;
Pande, N ;
Shang, ZD ;
Yu, N ;
Gutell, RR .
BMC BIOINFORMATICS, 2002, 3 (1)
[15]   The evolving ribosome: from non-coded peptide bond formation to sophisticated translation machinery [J].
Davidovich, Chen ;
Belousoff, Matthew ;
Bashan, Anat ;
Yonath, Ada .
RESEARCH IN MICROBIOLOGY, 2009, 160 (07) :487-492
[16]   RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex [J].
Davis, JH ;
Tonelli, M ;
Scott, LG ;
Jaeger, L ;
Williamson, JR ;
Butcher, SE .
JOURNAL OF MOLECULAR BIOLOGY, 2005, 351 (02) :371-382
[17]   ORIGIN OF LIFE - THE RNA WORLD [J].
GILBERT, W .
NATURE, 1986, 319 (6055) :618-618
[18]   PHYLOGENETIC ANALYSIS BASED ON RIBOSOMAL-RNA SEQUENCES SUPPORTS THE ARCHAEBACTERIAL RATHER THAN THE EOCYTE TREE [J].
GOUY, M ;
LI, WH .
NATURE, 1989, 339 (6220) :145-147
[19]   The complete structure of the 55S mammalian mitochondrial ribosome [J].
Greber, Basil J. ;
Bieri, Philipp ;
Leibundgut, Marc ;
Leitner, Alexander ;
Aebersold, Ruedi ;
Boehringer, Daniel ;
Ban, Nenad .
SCIENCE, 2015, 348 (6232) :303-308
[20]   RNA self-ligation: From oligonucleotides to full length ribozymes [J].
Gwiazda, Slawomir ;
Salomon, Kristina ;
Appel, Bettina ;
Mueller, Sabine .
BIOCHIMIE, 2012, 94 (07) :1457-1463