Complete chloroplast genome of Cymbidium ensifolium(Orchidaceae?

被引:7
作者
Jiang, Yu-Ting [1 ,2 ]
Lin, Ru-Qiang [1 ,2 ]
Liu, Bin [1 ,2 ]
Zeng, Qin-Meng [1 ,2 ]
Liu, Zhong-Jian [1 ,2 ,3 ]
Chen, Shi-Pin [1 ,2 ]
机构
[1] Fujian Agr & Forestry Univ, Coll Forestry, Fuzhou, Fujian, Peoples R China
[2] Fujian Agr & Forestry Univ, Coll Forestry, Key Lab Natl Forestry & Grassland Adm Orchid Cons, Fuzhou, Fujian, Peoples R China
[3] Fujian Agr & Forestry Univ, Coll Forestry, Fujian Coll & Univ Engn Res Inst Conservat & Util, Fuzhou, Fujian, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期
基金
中国国家自然科学基金;
关键词
Cymbidium ensifolium; plastid genome; phylogeny; orchid; ORCHID CONSERVATION;
D O I
10.1080/23802359.2019.1624637
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Cymbidium ensifolium is one of the most economical and ornamental significant orchids. It's facing serious genetic resources loss and habitat fragmentation. A conservation strategy is therefore imperative for this endangered orchid. Here, we report on the first complete chloroplast (cp) genome of C. ensifolium. Its full-length of 150,257 bp include large single-copy (LSC) region of 85,110 bp, small single-copy (SSC) region of 13,761 bp, and a pair of invert repeats (IR) regions of 25,692 bp. Plastid genome contain 137 genes, 78 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Cymbidium ensifolium was sister to C. sinense, Cy. Tortisepalum, and C. kanran. The cp genome will help for further research and conservation of C. ensifolium.
引用
收藏
页码:2236 / 2237
页数:2
相关论文
共 11 条
  • [1] Chen XQ, 2011, MANUAL CHINESE CYMBI
  • [2] Orchid conservation: how can we meet the challenges in the twenty-first century?
    Fay, Michael F.
    [J]. BOTANICAL STUDIES, 2018, 59
  • [3] Fay MF, 2009, ANN BOT-LONDON, V104, P359, DOI [10.1093/aob/mcp190, 10.1093/aob/mcp195]
  • [4] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
    Katoh, Kazutaka
    Standley, Daron M.
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
  • [5] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
    Kearse, Matthew
    Moir, Richard
    Wilson, Amy
    Stones-Havas, Steven
    Cheung, Matthew
    Sturrock, Shane
    Buxton, Simon
    Cooper, Alex
    Markowitz, Sidney
    Duran, Chris
    Thierer, Tobias
    Ashton, Bruce
    Meintjes, Peter
    Drummond, Alexei
    [J]. BIOINFORMATICS, 2012, 28 (12) : 1647 - 1649
  • [6] OrganellarGenomeDRAW-a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
    Lohse, Marc
    Drechsel, Oliver
    Kahlau, Sabine
    Bock, Ralph
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (W1) : W575 - W581
  • [7] Luo Y.B., 2003, Chinese Biodiversity, V11, P70, DOI [DOI 10.3321/J.ISSN:1005-0094.2003.01.010, 10.17520/biods.2003010]
  • [8] Ex Situ Conservation of Orchids in a Warming World
    Seaton, Philip T.
    Hu, Hong
    Perner, Holger
    Pritchard, Hugh W.
    [J]. BOTANICAL REVIEW, 2010, 76 (02) : 193 - 203
  • [9] RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
    Stamatakis, Alexandros
    [J]. BIOINFORMATICS, 2014, 30 (09) : 1312 - 1313
  • [10] Terrestrial orchid conservation in the age of extinction
    Swarts, Nigel D.
    Dixon, Kingsley W.
    [J]. ANNALS OF BOTANY, 2009, 104 (03) : 543 - 556