Synthetic Biology Approaches to Engineer Probiotics and Members of the Human Microbiota for Biomedical Applications

被引:81
作者
Bober, Josef R. [1 ]
Beisel, Chase L. [2 ]
Nair, Nikhil U. [1 ]
机构
[1] Tufts Univ, Dept Chem & Biol Engn, Medford, MA 02155 USA
[2] North Carolina State Univ, Dept Chem & Biomol Engn, Raleigh, NC 27695 USA
来源
ANNUAL REVIEW OF BIOMEDICAL ENGINEERING, VOL 20 | 2018年 / 20卷
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
probiotics; genetic tools; CRISPR; genome engineering; microbiome; LACTIC-ACID BACTERIA; HETEROLOGOUS PROTEIN SECRETION; GENE-EXPRESSION SYSTEM; ESCHERICHIA-COLI; LACTOBACILLUS-REUTERI; LACTOCOCCUS-LACTIS; GUT MICROBIOTA; ANTIMICROBIAL PEPTIDES; IN-VIVO; BIFIDOBACTERIUM-LONGUM;
D O I
10.1146/annurev-bioeng-062117-121019
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
An increasing number of studies have strongly correlated the composition of the human microbiota with many human health conditions and, in several cases, have shown that manipulating the microbiota directly affects health. These insights have generated significant interest in engineering indigenous microbiota community members and nonresident probiotic bacteria as biotic diagnostics and therapeutics that can probe and improve human health. In this review, we discuss recent advances in synthetic biology to engineer commensal and probiotic lactic acid bacteria, bifidobacteria, and Bacteroides for these purposes, and we provide our perspective on the future potential of these technologies.
引用
收藏
页码:277 / 300
页数:24
相关论文
共 149 条
[51]   Cervicovaginal Microbiota: Simple Is Better [J].
Gopinath, Smita ;
Iwasaki, Akiko .
IMMUNITY, 2015, 42 (05) :790-791
[52]   Sensitizing pathogens to antibiotics using the CRISPR-Cas system [J].
Goren, Moran ;
Yosef, Ido ;
Qimron, Udi .
DRUG RESISTANCE UPDATES, 2017, 30 :1-6
[53]   Oral Delivery of IL-27 Recombinant Bacteria Attenuates Immune Colitis in Mice [J].
Hanson, Miranda L. ;
Hixon, Julie A. ;
Li, Wenqing ;
Felber, Barbara K. ;
Anver, Miriam R. ;
Stewart, C. Andrew ;
Janelsins, Brian M. ;
Datta, Sandip K. ;
Shen, Wei ;
McLean, Mairi H. ;
Durum, Scott K. .
GASTROENTEROLOGY, 2014, 146 (01) :210-+
[54]   Constitutive delivery of bovine β-lactoglobulin to the digestive tracts of gnotobiotic mice by engineered Lactobacillus casei [J].
Hazebrouck, S. ;
Oozeer, R. ;
Adel-Patient, K. ;
Langella, P. ;
Rabot, S. ;
Wal, J. M. ;
Corthier, G. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (12) :7460-7467
[55]   Evaluation of novel inducible promoter/repressor systems for recombinant protein expression in Lactobacillus plantarum [J].
Heiss, Silvia ;
Hoermann, Angelika ;
Tauer, Christopher ;
Sonnleitner, Margot ;
Egger, Esther ;
Grabherr, Reingard ;
Heinl, Stefan .
MICROBIAL CELL FACTORIES, 2016, 15
[56]   A Novel Tightly Regulated Gene Expression System for the Human Intestinal Symbiont Bacteroides thetaiotaomicron [J].
Horn, Nikki ;
Carvalho, Ana L. ;
Overweg, Karin ;
Wegmann, Udo ;
Carding, Simon R. ;
Stentz, Regis .
FRONTIERS IN MICROBIOLOGY, 2016, 7
[57]   Development and Applications of CRISPR-Cas9 for Genome Engineering [J].
Hsu, Patrick D. ;
Lander, Eric S. ;
Zhang, Feng .
CELL, 2014, 157 (06) :1262-1278
[58]   Structure, function and diversity of the healthy human microbiome [J].
Huttenhower, Curtis ;
Gevers, Dirk ;
Knight, Rob ;
Abubucker, Sahar ;
Badger, Jonathan H. ;
Chinwalla, Asif T. ;
Creasy, Heather H. ;
Earl, Ashlee M. ;
FitzGerald, Michael G. ;
Fulton, Robert S. ;
Giglio, Michelle G. ;
Hallsworth-Pepin, Kymberlie ;
Lobos, Elizabeth A. ;
Madupu, Ramana ;
Magrini, Vincent ;
Martin, John C. ;
Mitreva, Makedonka ;
Muzny, Donna M. ;
Sodergren, Erica J. ;
Versalovic, James ;
Wollam, Aye M. ;
Worley, Kim C. ;
Wortman, Jennifer R. ;
Young, Sarah K. ;
Zeng, Qiandong ;
Aagaard, Kjersti M. ;
Abolude, Olukemi O. ;
Allen-Vercoe, Emma ;
Alm, Eric J. ;
Alvarado, Lucia ;
Andersen, Gary L. ;
Anderson, Scott ;
Appelbaum, Elizabeth ;
Arachchi, Harindra M. ;
Armitage, Gary ;
Arze, Cesar A. ;
Ayvaz, Tulin ;
Baker, Carl C. ;
Begg, Lisa ;
Belachew, Tsegahiwot ;
Bhonagiri, Veena ;
Bihan, Monika ;
Blaser, Martin J. ;
Bloom, Toby ;
Bonazzi, Vivien ;
Brooks, J. Paul ;
Buck, Gregory A. ;
Buhay, Christian J. ;
Busam, Dana A. ;
Campbell, Joseph L. .
NATURE, 2012, 486 (7402) :207-214
[59]   Engineered probiotic Escherichia coli can eliminate and prevent Pseudomonas aeruginosa gut infection in animal models [J].
Hwang, In Young ;
Koh, Elvin ;
Wong, Adison ;
March, John C. ;
Bentley, William E. ;
Lee, Yung Seng ;
Chang, Matthew Wook .
NATURE COMMUNICATIONS, 2017, 8
[60]   Reprogramming Microbes to Be Pathogen-Seeking Killers [J].
Hwang, In Young ;
Tan, Mui Hua ;
Koh, Elvin ;
Ho, Chun Loong ;
Poh, Chueh Loo ;
Chang, Matthew Wook .
ACS SYNTHETIC BIOLOGY, 2014, 3 (04) :228-237