Protein crystal structure obtained at 2.9 Å resolution from injecting bacterial cells into an X-ray free-electron laser beam

被引:93
|
作者
Sawaya, Michael R. [1 ,2 ]
Cascio, Duilio [1 ,2 ]
Gingery, Mari [1 ,2 ]
Rodriguez, Jose [1 ,2 ]
Goldschmidt, Lukasz [1 ,2 ]
Colletier, Jacques-Philippe [4 ,5 ,6 ]
Messerschmidt, Marc M. [7 ]
Boutet, Sebastien [7 ]
Koglin, Jason E. [7 ]
Williams, Garth J. [7 ]
Brewster, Aaron S. [8 ]
Nass, Karol [9 ]
Hattne, Johan [8 ]
Botha, Sabine
Doak, R. Bruce [9 ,10 ]
Shoeman, Robert L. [9 ]
DePonte, Daniel P.
Park, Hyun-Woo [11 ]
Federici, Brian A. [11 ,12 ]
Sauter, Nicholas K. [8 ]
Schlichting, Ilme [9 ]
Eisenberg, David S. [1 ,2 ,3 ]
机构
[1] Univ Calif Los Angeles, UCLA DOE Inst Genom & Prote, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, Dept Biol Chem, Los Angeles, CA 90095 USA
[3] Univ Calif Los Angeles, Howard Hughes Med Inst, Los Angeles, CA 90095 USA
[4] Univ Grenoble Alpes, F-38044 Grenoble, France
[5] CNRS, F-38044 Grenoble, France
[6] Inst Biol Struct, Commissariat Energie Atom, F-38044 Grenoble, France
[7] Natl Accelerator Lab, SLAC, Linac Coherent Light Source, Menlo Pk, CA 94025 USA
[8] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA 94720 USA
[9] Max Planck Inst Med Res, D-69120 Heidelberg, Germany
[10] Arizona State Univ, Dept Phys, Tempe, AZ 85287 USA
[11] Univ Calif Riverside, Dept Entomol, Riverside, CA 92521 USA
[12] Univ Calif Riverside, Grad Program Cell Mol & Dev Biol, Riverside, CA 92521 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
XFEL; Cry3A insecticidal toxin; serial femtosecond crystallography; SERIAL FEMTOSECOND CRYSTALLOGRAPHY; THURINGIENSIS VAR TENEBRIONIS; BACILLUS-THURINGIENSIS; ROOM-TEMPERATURE; DELTA-ENDOTOXIN; PHOTOSYSTEM-II; IN-VIVO; NANOCRYSTALLOGRAPHY; DIFFRACTION; REFINEMENT;
D O I
10.1073/pnas.1413456111
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
It has long been known that toxins produced by Bacillus thuringiensis (Bt) are stored in the bacterial cells in crystalline form. Here we describe the structure determination of the Cry3A toxin found naturally crystallized within Bt cells. When whole Bt cells were streamed into an X-ray free-electron laser beam we found that scattering from other cell components did not obscure diffraction from the crystals. The resolution limits of the best diffraction images collected from cells were the same as from isolated crystals. The integrity of the cells at the moment of diffraction is unclear; however, given the short time (similar to 5 mu s) between exiting the injector to intersecting with the X-ray beam, our result is a 2.9-angstrom-resolution structure of a crystalline protein as it exists in a living cell. The study suggests that authentic in vivo diffraction studies can produce atomic-level structural information.
引用
收藏
页码:12769 / 12774
页数:6
相关论文
共 50 条
  • [21] Time-resolved protein nanocrystallography using an X-ray free-electron laser
    Aquila, Andrew
    Hunter, Mark S.
    Doak, R. Bruce
    Kirian, Richard A.
    Fromme, Petra
    White, Thomas A.
    Andreasson, Jakob
    Arnlund, David
    Bajt, Sasa
    Barends, Thomas R. M.
    Barthelmess, Miriam
    Bogan, Michael J.
    Bostedt, Christoph
    Bottin, Herve
    Bozek, John D.
    Caleman, Carl
    Coppola, Nicola
    Davidsson, Jan
    DePonte, Daniel P.
    Elser, Veit
    Epp, Sascha W.
    Erk, Benjamin
    Fleckenstein, Holger
    Foucar, Lutz
    Frank, Matthias
    Fromme, Raimund
    Graafsma, Heinz
    Grotjohann, Ingo
    Gumprecht, Lars
    Hajdu, Janos
    Hampton, Christina Y.
    Hartmann, Andreas
    Hartmann, Robert
    Hauriege, Stefan
    Hauser, Guenter
    Hirsemann, Helmut
    Holl, Peter
    Holton, James M.
    Hoemke, Andre
    Johansson, Linda
    Kimmel, Nils
    Kassemeyer, Stephan
    Krasniqi, Faton
    Kuehnel, Kaiuwe
    Liang, Mengning
    Lomb, Lukas
    Malmerberg, Erik
    Marchesini, Stefano
    Martin, Andrew V.
    Maia, Filipe R. N. C.
    OPTICS EXPRESS, 2012, 20 (03): : 2706 - 2716
  • [22] Structural resolution of a small organic molecule by serial X-ray free-electron laser and electron crystallography
    Takaba, Kiyofumi
    Maki-Yonekura, Saori
    Inoue, Ichiro
    Tono, Kensuke
    Hamaguchi, Tasuku
    Kawakami, Keisuke
    Naitow, Hisashi
    Ishikawa, Tetsuya
    Yabashi, Makina
    Yonekura, Koji
    NATURE CHEMISTRY, 2023, 15 (04) : 491 - +
  • [23] Native phasing of x-ray free-electron laser data for a G protein-coupled receptor
    Batyuk, Alexander
    Galli, Lorenzo
    Ishchenko, Andrii
    Han, Gye Won
    Gati, Cornelius
    Popov, Petr A.
    Lee, Ming-Yue
    Stauch, Benjamin
    White, Thomas A.
    Barty, Anton
    Aquila, Andrew
    Hunter, Mark S.
    Liang, Mengning
    Boutet, Sebastien
    Pu, Mengchen
    Liu, Zhi-jie
    Nelson, Garrett
    James, Daniel
    Li, Chufeng
    Zhao, Yun
    Spence, John C. H.
    Liu, Wei
    Fromme, Petra
    Katritch, Vsevolod
    Weierstall, Uwe
    Stevens, Raymond C.
    Cherezov, Vadim
    SCIENCE ADVANCES, 2016, 2 (09):
  • [25] Ultrafast nonthermal heating of water initiated by an X-ray Free-Electron Laser
    Beyerlein, Kenneth R.
    Jonsson, H. Olof
    Alonso-Mori, Roberto
    Aquila, Andrew
    Barty, Sasa
    Barty, Anton
    Bean, Richard
    Koglin, Jason E.
    Messerschmidt, Marc
    Ragazzon, Davide
    Sokaras, Dimosthenis
    Williams, Garth J.
    Hau-Riege, Stefan
    Boutet, Sebastien
    Chapman, Henry N.
    Imneanu, Nicusor T.
    Caleman, Carl
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (22) : 5652 - 5657
  • [26] Anomalous signal from S atoms in protein crystallographic data from an X-ray free-electron laser
    Barends, Thomas R. M.
    Foucar, Lutz
    Shoeman, Robert L.
    Bari, Sadia
    Epp, Sascha W.
    Hartmann, Robert
    Hauser, Gunter
    Huth, Martin
    Kieser, Christian
    Lomb, Lukas
    Motomura, Koji
    Nagaya, Kiyonobu
    Schmidt, Carlo
    Strecker, Rafael
    Anielski, Denis
    Boll, Rebecca
    Erk, Benjamin
    Fukuzawa, Hironobu
    Hartmann, Elisabeth
    Hatsui, Takaki
    Holl, Peter
    Inubushi, Yuichi
    Ishikawa, Tetsuya
    Kassemeyer, Stephan
    Kaiser, Christian
    Koeck, Frank
    Kunishima, Naoki
    Kurka, Moritz
    Rolles, Daniel
    Rudek, Benedikt
    Rudenko, Artem
    Sato, Takahiro
    Schroeter, Claus-Dieter
    Soltau, Heike
    Strueder, Lothar
    Tanaka, Tomoyuki
    Togashi, Tadashi
    Tono, Kensuke
    Ullrich, Joachim
    Yase, Satoshi
    Wada, Shin-ichi
    Yao, Makoto
    Yabashi, Makina
    Ueda, Kiyoshi
    Schlichting, Ilme
    ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2013, 69 : 838 - 842
  • [27] Novel diamond X-ray crystal optics for synchrotrons and X-ray free-electron lasers
    Stoupin, Stanislav
    DIAMOND AND RELATED MATERIALS, 2014, 49 : 39 - 47
  • [28] Electronic damage in S atoms in a native protein crystal induced by an intense X-ray free-electron laser pulse
    Galli, L.
    Son, S. -K.
    Klinge, M.
    Bajt, S.
    Barty, A.
    Bean, R.
    Betzel, C.
    Beyerlein, K. R.
    Caleman, C.
    Doak, R. B.
    Duszenko, M.
    Fleckenstein, H.
    Gati, C.
    Hunt, B.
    Kirian, R. A.
    Liang, M.
    Nanao, M. H.
    Nass, K.
    Oberthuer, D.
    Redecke, L.
    Shoeman, R.
    Stellato, F.
    Yoon, C. H.
    White, T. A.
    Yefanov, O.
    Spence, J.
    Chapman, H. N.
    STRUCTURAL DYNAMICS-US, 2015, 2 (04):
  • [29] A Bragg beam splitter for hard x-ray free-electron lasers
    Osaka, Taito
    Yabashi, Makina
    Sano, Yasuhisa
    Tono, Kensuke
    Inubushi, Yuichi
    Sato, Takahiro
    Matsuyama, Satoshi
    Ishikawa, Tetsuya
    Yamauchi, Kazuto
    OPTICS EXPRESS, 2013, 21 (03): : 2823 - 2831
  • [30] Direct protein crystallization on ultrathin membranes for diffraction measurements at X-ray free-electron lasers
    Opara, Nadia
    Martiel, Isabelle
    Arnold, Stefan A.
    Braun, Thomas
    Stahlberg, Henning
    Makita, Mikako
    David, Christian
    Padeste, Celestino
    JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2017, 50 : 909 - 918