Marine DNA Viral Macro- and Microdiversity from Pole to Pole

被引：511

作者：

Gregory, Ann C. ^{[1
]}

Zayed, Ahmed A. ^{[1
]}

Conceicao-Neto, Nadia ^{[2
,3
]}

Temperton, Ben ^{[4
]}

Bolduc, Ben ^{[1
]}

Alberti, Adriana ^{[5
,17
]}

Ardyna, Mathieu ^{[6
,25
]}

Arkhipova, Ksenia ^{[7
]}

Carmichael, Margaux ^{[8
,17
]}

Cruaud, Corinne ^{[9
,17
]}

Dimier, Celine ^{[6
,10
,17
]}

Dominguez-Huerta, Guillermo ^{[1
]}

Ferland, Joannie ^{[11
]}

Kandels, Stefanie ^{[12
,13
]}

Liu, Yunxiao ^{[1
]}

Marec, Claudie ^{[11
]}

Pesant, Stephane ^{[14
,15
]}

Picheral, Marc ^{[6
,17
]}

Pisarev, Sergey ^{[16
]}

Poulain, Julie ^{[5
,17
]}

Tremblay, Jean-Eric ^{[11
]}

Vik, Dean ^{[1
]}

Babin, Marcel ^{[11
]}

Bowler, Chris ^{[10
,17
]}

Culley, Alexander, I ^{[18
]}

De Vargas, Colomban ^{[8
,17
]}

Dutilh, Bas E. ^{[7
,19
]}

Ludicone, Daniele ^{[20
]}

Karp-Boss, Lee ^{[21
]}

Roux, Simon ^{[1
,26
]}

Sunagawa, Shinichi ^{[22
,23
]}

Wincker, Patrick ^{[5
,17
]}

Sullivan, Matthew B. ^{[1
,24
]}

机构：

[1] Ohio State Univ, Dept Microbiol, 484 W 12th Ave, Columbus, OH 43210 USA

[2] KU Leuven Univ Leuven, Rega Inst Med Res, Dept Microbiol & Immunol, Lab Viral Metagen, Leuven, Belgium

[3] KU Leuven Univ Leuven, Rega Inst Med Res, Dept Microbiol & Immunol, Lab Clin & Epidemiol Virol, Leuven, Belgium

[4] Univ Exeter, Sch Biosci, Exeter, Devon, England

[5] Univ Paris Saclay, Univ Evry, Inst Francois Jacob, Genom Metabol,Genoscope,CEA,CNRS, F-91057 Evry, France

[6] Sorbonne Univ, CNRS, LOV, F-06230 Villefranche Sur Mer, France

[7] Univ Utrecht, Theoret Biol & Bioinformat, Utrecht, Netherlands

[8] Sorbonne Univ, CNRS, Stn Biol Roscoff, AD2M ECOMAP, F-29680 Roscoff, France

[9] CEA, Inst Biol Francois Jacob, Genoscope, F-91057 Evry, France

[10] Univ PSL, INSERM, CNRS, IBENS,Dept Biol,Ecole Normale Super, F-75005 Paris, France

[11] Univ Laval, Univ Laval Canada CNRS France, Quebec Ocean & Takuvik Joint Int Lab UMI 3376, Dept Biol, Quebec City, PQ, Canada

[12] European Mol Biol Lab, Struct & Computat Biol, D-69117 Heidelberg, Germany

[13] European Mol Biol Lab, Directors Res, D-69117 Heidelberg, Germany

[14] Univ Bremen, Data Publisher Earth & Environm Sci, PANGAEA, D-28359 Bremen, Germany

[15] Bremen Univ, MARUM, D-28359 Bremen, Germany

[16] Russian Acad Sci, Shirshov Inst Oceanol, 36 Nakhimovsky Prosp, Moscow 117997, Russia

[17] Res Federat Study Global Ocean Syst Ecol & Evolut, Tara Oceans GOSEE FR2022, 3 Rue Michel Ange, F-75016 Paris, France

[18] Univ Laval, Dept Biochim Microbiol & Bioinformat, Quebec City, PQ G1V 0A6, Canada

[19] Radboud Univ Nijmegen, Ctr Mol & Biomol Informat, Med Ctr, Nijmegen, Netherlands

[20] Staz Zool Anton Dohrn, I-80121 Naples, Italy

[21] Univ Maine, Sch Marine Sci, Orono, ME USA

[22] Swiss Fed Inst Technol, Inst Microbiol, Dept Biol, CH-8093 Zurich, Switzerland

[23] Swiss Fed Inst Technol, Swiss Inst Bioinformat, CH-8093 Zurich, Switzerland

[24] Ohio State Univ, Dept Civil Environm & Geodet Engn, Columbus, OH 43210 USA

[25] Stanford Univ, Dept Earth Syst Sci, Stanford, CA 94305 USA

[26] Joint Genome Inst, Dept Energy, Walnut Creek, CA 94598 USA

来源：

CELL | 2019年 / 177卷 / 05期

关键词：

SPECIES-DIVERSITY; MICROBIAL DIVERSITY; BIODIVERSITY; VIRUSES; DIVERSIFICATION; RECOMBINATION; BIOGEOGRAPHY; POPULATION; PATTERNS; OCEAN;

D O I：

10.1016/j.cell.2019.03.040

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Microbes drive most ecosystems and are modulated by viruses that impact their lifespan, gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community diversity remain difficult to assess due to classification issues and few reference genomes. Here, we establish an similar to 12-fold expanded global ocean DNA virome dataset of 195,728 viral populations, now including the Arctic Ocean, and validate that these populations form discrete genotypic clusters. Meta-community analyses revealed five ecological zones throughout the global ocean, including two distinct Arctic Across the zones, local and global patterns and drivers in viral community diversity were established for macrodiversity (inter-population diversity; and microdiversity (intra-population genetic variation). These patterns sometimes, but not always, paralleled those from macro-organisms and revealed temperate and tropical surface waters and the Arctic as biodiversity hotspots and mechanistic hypotheses to explain them. Such further understanding of ocean viruses is critical for broader inclusion in ecosystem models.

引用

页码：1109 / +

页数：29

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