Impact of oil contamination and biostimulation on the diversity of indigenous bacterial communities in soil microcosms

被引:75
作者
Evans, FF
Rosado, AS
Sebastian, GV
Casella, R
Machado, PLOA
Holmström, C
Kjelleberg, S
van Elsas, JD
Seldin, L
机构
[1] Univ Fed Rio de Janeiro, Inst Microbiol Prof Paulo de Goes, CCS, BR-21941590 Rio De Janeiro, Brazil
[2] Petrobras SA, CENPES, Rio De Janeiro, Brazil
[3] Embrapa Solos, Rio De Janeiro, Brazil
[4] Univ New S Wales, Sch Biotechnol & Biomol Sci, Kensington, NSW 2033, Australia
[5] Univ Groningen, NL-9750 RA Haren, Netherlands
关键词
Atlantic forest; bacterial diversity; biostimulation; cambisol; crude oil; DGGE; 16S rRNA gene; soil microcosms;
D O I
10.1016/j.femsec.2004.04.007
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The aim of this study was to analyse the effect of oil contamination and biostimulation (soil pH raise, and nitrogen, phosphate and sulphur addition) on the diversity of a bacterial community of an acidic Cambisol under Atlantic Forest. The experiment was based on the enumeration of bacterial populations and hydrocarbon degraders in microcosms through the use of conventional plating techniques and molecular fingerprinting of samples directly from the environment. PCR followed by denaturing gradient gel clectrophoresis (DGGE) was used to generate microbial community fingerprints employing 16S rRNA gene as molecular marker. Biostimulation led to increases of soil pH (to 7.0) and of the levels of phosphorus and K, Ca, and Mg. Oil contamination caused an increase in soil organic carbon (170-190% higher than control soil). Total bacterial counts were stable throughout the experiment, while MPN counts of hydrocarbon degraders showed an increase in the biostimulated and oil-contaminated soil samples. Molecular fingerprinting performed with 16S rRNA gene PCR and DGGE analysis revealed stable patterns along the 360 days of experiment, showing little change in oil-contaminated microcosms after 90 days. The DGGE patterns of the biostimulated samples showed severe changes due to decreases in the number of bands as compared to the control samples as from 15 days after addition of nutrients to the soil. Results obtained in the present study indicate that the addition of inorganic compounds to soil in conjunction with oil contamination has a greater impact on the bacterial community than oil contamination only. (C) 2004 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:295 / 305
页数:11
相关论文
共 31 条
[1]   Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants [J].
Boon, N ;
De Windt, W ;
Verstraete, W ;
Top, EM .
FEMS MICROBIOLOGY ECOLOGY, 2002, 39 (02) :101-112
[2]   SHEEN SCREEN, A MINIATURIZED MOST-PROBABLE-NUMBER METHOD FOR ENUMERATION OF OIL-DEGRADING MICROORGANISMS [J].
BROWN, EJ ;
BRADDOCK, JF .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1990, 56 (12) :3895-3896
[3]   Microbial communities in different soil types do not converge after diesel contamination [J].
Bundy, JG ;
Paton, GI ;
Campbell, CD .
JOURNAL OF APPLIED MICROBIOLOGY, 2002, 92 (02) :276-288
[4]   Distribution of catabolic pathways in some hydrocarbon-degrading bacteria from a subsurface polluted soil [J].
Cavalca, L ;
Di Gennaro, P ;
Colombo, M ;
Andreoni, V ;
Bernasconi, S ;
Ronco, I ;
Bestetti, G .
RESEARCH IN MICROBIOLOGY, 2000, 151 (10) :877-887
[5]  
Deuel Jr L., 1997, SOIL REMEDIATION PET
[6]   Analysis of bacterial community structure in sulfurous-oil-containing soils and detection of species carrying dibenzothiophene desulfurization (dsz) genes [J].
Duarte, GF ;
Rosado, AS ;
Seldin, L ;
de Araujo, W ;
van Elsas, JD .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (03) :1052-1062
[7]  
*EMBR CENTR NAC PE, 1997, MAN MET AN SOL
[8]   Isolation and characterization of a novel hydrocarbon-degrading, Gram-positive bacterium, isolated from intertidal beach sediment, and description of Planococcus alkanoclasticus sp nov. [J].
Engelhardt, MA ;
Daly, K ;
Swannell, RPJ ;
Head, IM .
JOURNAL OF APPLIED MICROBIOLOGY, 2001, 90 (02) :237-247
[9]   Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis. [J].
Gelsomino, A ;
Keijzer-Wolters, AC ;
Cacco, G ;
van Elsas, JD .
JOURNAL OF MICROBIOLOGICAL METHODS, 1999, 38 (1-2) :1-15
[10]   Strain-specific ureolytic microbial calcium carbonate precipitation [J].
Hammes, F ;
Boon, N ;
de Villiers, J ;
Verstraete, W ;
Siciliano, SD .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (08) :4901-4909