Role of Titin Missense Variants in Dilated Cardiomyopathy

被引:59
作者
Begay, Rene L. [1 ]
Graw, Sharon [1 ]
Sinagra, Gianfranco [2 ,3 ,4 ]
Merlo, Marco [2 ,3 ,4 ]
Slavov, Dobromir [1 ]
Gowan, Katherine [5 ]
Jones, Kenneth L. [5 ]
Barbati, Giulia [2 ,3 ,4 ]
Spezzacatene, Anita [2 ,3 ,4 ]
Brun, Francesca [2 ,3 ,4 ]
Di Lenarda, Andrea [2 ,3 ,4 ]
Smith, John E. [6 ]
Granzier, Henk L. [6 ]
Mestroni, Luisa [1 ]
Taylor, Matthew [1 ]
机构
[1] Univ Colorado Denver, CU Cardiovasc Inst, Aurora, CO USA
[2] ASS1 Trieste, Cardiovasc Dept Ospedali Riuniti, Trieste, Italy
[3] ASS1 Trieste, Ctr Cardiovasc, Trieste, Italy
[4] Univ Trieste, Trieste, Italy
[5] Univ Colorado, Dept Biochem & Mol Genet, Aurora, CO 80045 USA
[6] Univ Arizona, Mol Cardiovasc Res Program, Tucson, AZ USA
来源
JOURNAL OF THE AMERICAN HEART ASSOCIATION | 2015年 / 4卷 / 11期
基金
美国国家卫生研究院;
关键词
cardiomyopathy; cardiovascular genetics; dilated cardiomyopathy; heart failure; missense variants; SEQUENCE; GUIDELINES; IDENTIFY;
D O I
10.1161/JAHA.115.002645
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Background-The titin gene (TTN) encodes the largest human protein, which plays a central role in sarcomere organization and passive myocyte stiffness. TTN truncating mutations cause dilated cardiomyopathy (DCM); however, the role of TTN missense variants in DCM has been difficult to elucidate because of the presence of background TTN variation. Methods and Results-A cohort of 147 DCM index subjects underwent DNA sequencing for 313 TTN exons covering the N2B and N2BA cardiac isoforms of TTN. Of the 348 missense variants, we identified 44 "severe" rare variants by using a bioinformatic filtering process in 37 probands. Of these, 5 probands were double heterozygotes (additional variant in another DCM gene) and 7 were compound heterozygotes (2 TTN "severe" variants). Segregation analysis allowed the classification of the "severe" variants into 5 "likely" (cosegregating), 5 "unlikely" (noncosegregating), and 34 "possibly" (where family structure precluded segregation analysis) disease-causing variants. Patients with DCM carrying "likely" or "possibly" pathogenic TTN "severe" variants did not show a different outcome compared with "unlikely" and noncarriers of a "severe" TTN variant. However, the "likely" and "possibly" disease-causing variants were overrepresented in the C-zone of the A-band region of the sarcomere. Conclusions-TTN missense variants are common and present a challenge for bioinformatic classification, especially when informative families are not available. Although DCM patients carrying bioinformatically "severe" TTN variants do not appear to have a worse clinical course than noncarriers, the nonrandom distribution of "likely" and "possibly" disease-causing variants suggests a potential biological role for some TTN missense variants.
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页数:17
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共 23 条
  • [1] A method and server for predicting damaging missense mutations
    Adzhubei, Ivan A.
    Schmidt, Steffen
    Peshkin, Leonid
    Ramensky, Vasily E.
    Gerasimova, Anna
    Bork, Peer
    Kondrashov, Alexey S.
    Sunyaev, Shamil R.
    [J]. NATURE METHODS, 2010, 7 (04) : 248 - 249
  • [2] An integrated map of genetic variation from 1,092 human genomes
    Altshuler, David M.
    Durbin, Richard M.
    Abecasis, Goncalo R.
    Bentley, David R.
    Chakravarti, Aravinda
    Clark, Andrew G.
    Donnelly, Peter
    Eichler, Evan E.
    Flicek, Paul
    Gabriel, Stacey B.
    Gibbs, Richard A.
    Green, Eric D.
    Hurles, Matthew E.
    Knoppers, Bartha M.
    Korbel, Jan O.
    Lander, Eric S.
    Lee, Charles
    Lehrach, Hans
    Mardis, Elaine R.
    Marth, Gabor T.
    McVean, Gil A.
    Nickerson, Deborah A.
    Schmidt, Jeanette P.
    Sherry, Stephen T.
    Wang, Jun
    Wilson, Richard K.
    Gibbs, Richard A.
    Dinh, Huyen
    Kovar, Christie
    Lee, Sandra
    Lewis, Lora
    Muzny, Donna
    Reid, Jeff
    Wang, Min
    Wang, Jun
    Fang, Xiaodong
    Guo, Xiaosen
    Jian, Min
    Jiang, Hui
    Jin, Xin
    Li, Guoqing
    Li, Jingxiang
    Li, Yingrui
    Li, Zhuo
    Liu, Xiao
    Lu, Yao
    Ma, Xuedi
    Su, Zhe
    Tai, Shuaishuai
    Tang, Meifang
    [J]. NATURE, 2012, 491 (7422) : 56 - 65
  • [3] The complete gene sequence of titin, expression of an unusual ≈700-kDa titin isoform, and its interaction with obscurin identify a novel Z-line to I-band linking system
    Bang, ML
    Centner, T
    Fornoff, F
    Geach, AJ
    Gotthardt, M
    McNabb, M
    Witt, CC
    Labeit, D
    Gregorio, CC
    Granzier, H
    Labeit, S
    [J]. CIRCULATION RESEARCH, 2001, 89 (11) : 1065 - 1072
  • [4] Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP plus
    Davydov, Eugene V.
    Goode, David L.
    Sirota, Marina
    Cooper, Gregory M.
    Sidow, Arend
    Batzoglou, Serafim
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2010, 6 (12)
  • [5] Population-Based Variation in Cardiomyopathy Genes
    Golbus, Jessica R.
    Puckelwartz, Megan J.
    Fahrenbach, John P.
    Dellefave-Castillo, Lisa M.
    Wolfgeher, Don
    McNally, Elizabeth M.
    [J]. CIRCULATION-CARDIOVASCULAR GENETICS, 2012, 5 (04) : 391 - 399
  • [6] Truncations of Titin Causing Dilated Cardiomyopathy
    Herman, Daniel S.
    Lam, Lien
    Taylor, Matthew R. G.
    Wang, Libin
    Teekakirikul, Polakit
    Christodoulou, Danos
    Conner, Lauren
    DePalma, Steven R.
    McDonough, Barbara
    Sparks, Elizabeth
    Teodorescu, Debbie Lin
    Cirino, Allison L.
    Banner, Nicholas R.
    Pennell, Dudley J.
    Graw, Sharon
    Merlo, Marco
    Di Lenarda, Andrea
    Sinagra, Gianfranco
    Bos, J. Martijn
    Ackerman, Michael J.
    Mitchell, Richard N.
    Murry, Charles E.
    Lakdawala, Neal K.
    Ho, Carolyn Y.
    Barton, Paul J. R.
    Cook, Stuart A.
    Mestroni, Luisa
    Seidman, J. G.
    Seidman, Christine E.
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 2012, 366 (07) : 619 - 628
  • [7] Coding Sequence Mutations Identified in MYH7, TNNT2, SCN5A, CSRP3, LBD3, and TCAP from 313 Patients with Familial or Idiopathic Dilated Cardiomyopathy
    Hershberger, Ray E.
    Parks, Sharie B.
    Kushner, Jessica D.
    Li, Duanxiang
    Ludwigsen, Susan
    Jakobs, Petra
    Nauman, Deirdre
    Burgess, Donna
    Partain, Julie
    Litt, Michael
    [J]. CTS-CLINICAL AND TRANSLATIONAL SCIENCE, 2008, 1 (01): : 21 - 26
  • [8] Dilated cardiomyopathy
    Jefferies, John Lynn
    Towbin, Jeffrey A.
    [J]. LANCET, 2010, 375 (9716) : 752 - 762
  • [9] Titin Is a Major Human Disease Gene
    LeWinter, Martin M.
    Granzier, Henk L.
    [J]. CIRCULATION, 2013, 127 (08) : 938 - 944
  • [10] dbNSFP: A Lightweight Database of Human Nonsynonymous SNPs and Their Functional Predictions
    Liu, Xiaoming
    Jian, Xueqiu
    Boerwinkle, Eric
    [J]. HUMAN MUTATION, 2011, 32 (08) : 894 - 899