Evaluation of a co-extraction method for real-time PCR-based body fluid identification and DNA typing

被引:14
作者
Watanabe, Ken [1 ]
Iwashima, Yasuki [1 ]
Akutsu, Tomoko [1 ]
Sekiguchi, Kazumasa [1 ]
Sakurada, Koichi [1 ]
机构
[1] Natl Res Inst Police Sci, Kashiwa, Chiba 2770882, Japan
关键词
Body fluid identification; Real-time RT-PCR; DNA/RNA co-extraction; COLLABORATIVE EDNAP EXERCISE; MESSENGER-RNA BIOMARKERS; RNA/DNA CO-ANALYSIS; VAGINAL SECRETIONS; BLOOD STAINS; RT-PCR; SAMPLES; SYSTEM; SALIVA; NASAL;
D O I
10.1016/j.legalmed.2013.11.002
中图分类号
DF [法律]; D9 [法律]; R [医药、卫生];
学科分类号
0301 ; 10 ;
摘要
Body fluid identification and individual identification are an important series of tests in usual criminal investigations. Recent reports have demonstrated a new approach using DNA/RNA co-extraction methods in which RNA for body fluid identification and DNA for short tandem repeat (STR) typing are extracted simultaneously from the same sample. This study evaluated a standard co-extraction kit, the AllPrep (R) DNA/RNA Mini Kit, in order to demonstrate the availability of the co-extraction procedure for those real-time polymerase chain reaction-based body fluid identification methods that we have validated previously. We demonstrated that the use of the Allprep Kit, for which we adjusted the lysis temperature to 56 C to improve extraction efficiency, can simultaneously extract sufficient RNA and DNA for body fluid identification and STR analysis; however, a longer incubation at a high temperature slightly affected the Delta Ct value of each target gene and appeared to be not as effective for DNA extraction from old stains as from 1-day-old stains. This method is promising for future forensic investigations because the use of this kit can reduce sample consumption for body fluid identification and DNA typing. (C) 2013 Elsevier Ireland Ltd. All rights reserved.
引用
收藏
页码:56 / 59
页数:4
相关论文
共 50 条
[31]   Detection of point mutations in KRAS oncogene by real-time PCR-based genotyping assay in GIT diseases [J].
Ugorcakova, J. ;
Hlavaty, T. ;
Novotna, T. ;
Bukovska, G. .
BRATISLAVA MEDICAL JOURNAL-BRATISLAVSKE LEKARSKE LISTY, 2012, 113 (02) :73-79
[32]   Use of Occult Blood Detection Cards for Real-Time PCR-Based Diagnosis of Schistosoma Mansoni Infection [J].
Schunk, Mirjam ;
Mekonnen, Seleshi Kebede ;
Wondafrash, Beyene ;
Mengele, Carolin ;
Fleischmann, Erna ;
Herbinger, Karl-Heinz ;
Verweij, Jaco J. ;
Geldmacher, Christof ;
Bretzel, Gisela ;
Loscher, Thomas ;
Zeynudin, Ahmed .
PLOS ONE, 2015, 10 (09)
[33]   Multi-target plasmid controls for conventional and real-time PCR-based serotyping of Streptococcus pneumoniae [J].
Schembri, Jack ;
Gillis, Hayley D. ;
Lang, Amanda L. S. ;
Warhuus, Michelle ;
Martin, Irene ;
Demczuk, Walter ;
ElSherif, May ;
McNeil, Shelly A. ;
LeBlanc, Jason J. .
PLASMID, 2018, 98 :45-51
[34]   Real-time PCR-based detection and quantification of genetically modified maize in processed feeds commercialised in Malaysia [J].
Kaur, Jasbeer ;
Radu, Son ;
Ghazali, Farinazleen Mohamad ;
Kqueen, Cheah Yoke .
FOOD CONTROL, 2010, 21 (11) :1536-1544
[35]   Identification and evaluation of reference genes for quantitative real-time PCR analysis in Polygonum cuspidatum based on transcriptome data [J].
Wang, Xiaowei ;
Wu, Zhijun ;
Bao, Wenqi ;
Hu, Hongyan ;
Chen, Mo ;
Chai, Tuanyao ;
Wang, Hong .
BMC PLANT BIOLOGY, 2019, 19 (01)
[36]   A novel application of real-time RT-LAMP for body fluid identification: using HBB detection as the model [J].
Su, Chih-Wen ;
Li, Chiao-Yun ;
Lee, James Chun-I ;
Ji, Dar-Der ;
Li, Shu-Ying ;
Daniel, Barbara ;
Syndercombe-Court, Denise ;
Linacre, Adrian ;
Hsieh, Hsing-Mei .
FORENSIC SCIENCE MEDICINE AND PATHOLOGY, 2015, 11 (02) :208-215
[37]   Assessment of real-time PCR for Helicobacter pylori DNA detection in stool with co-infection of intestinal parasites: a comparative study of DNA extraction methods [J].
Leonardi, Martina ;
La Marca, Giulia ;
Pajola, Barbara ;
Perandin, Francesca ;
Ligozzi, Marco ;
Pomari, Elena .
BMC MICROBIOLOGY, 2020, 20 (01)
[38]   Comparison of three rapid and easy bacterial DNA extraction methods for use with quantitative real-time PCR [J].
van Tongeren, S. P. ;
Degener, J. E. ;
Harmsen, H. J. M. .
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES, 2011, 30 (09) :1053-1061
[39]   Ultrasensitive detection of serum hepatitis B virus by coupling ultrafiltration DNA extraction with real-time PCR [J].
Wu, Bin ;
Xiao, Feng ;
Li, Peiwen ;
Du, Yan ;
Lin, Jinqiong ;
Ming, Kaihua ;
Chen, Bin ;
Lei, Xiuxia ;
Xu, Banglao ;
Liu, Dayu .
PLOS ONE, 2017, 12 (02)
[40]   Development and evaluation of a real-time PCR assay for detection of Pneumocystis jirovecii DNA in bronchoalveolar lavage fluid of HIV-infected patients [J].
Huggett, J. F. ;
Taylor, M. S. ;
Kocjan, G. ;
Evans, H. E. ;
Morris-Jones, S. ;
Gant, V. ;
Novak, T. ;
Costello, A. M. ;
Zumla, A. ;
Miller, R. F. .
THORAX, 2008, 63 (02) :154-159