10KP: A phylodiverse genome sequencing plan

被引：163

作者：

Cheng, Shifeng ^{[1
,2
]}

Melkonian, Michael ^{[3
]}

Smith, Stephen A. ^{[4
]}

Brockington, Samuel ^{[5
]}

Archibald, John M. ^{[6
]}

Delaux, Pierre-Marc ^{[7
]}

Li, Fay-Wei ^{[8
,9
]}

Melkonian, Barbara ^{[3
]}

Mavrodiev, Evgeny V. ^{[10
]}

Sun, Wenjing ^{[1
,2
]}

Fu, Yuan ^{[1
,2
]}

Yang, Huanming ^{[1
,11
]}

Soltis, Douglas E. ^{[10
,12
]}

Graham, Sean W. ^{[13
]}

Soltis, Pamela S. ^{[10
,12
]}

Liu, Xin ^{[1
,2
]}

Xu, Xun ^{[1
,2
]}

Wong, Gane Ka-Shu ^{[1
,14
,15
]}

机构：

[1] BGI Shenzhen, Shenzhen 518083, Peoples R China

[2] BGI Shenzhen, China Natl GeneBank, Shenzhen 518120, Peoples R China

[3] Univ Cologne, Bot Inst, D-50674 Cologne, Germany

[4] Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA

[5] Univ Cambridge, Dept Plant Sci, Tennis Court Rd, Cambridge CB2 3EA, England

[6] Dalhousie Univ, Dept Biochem & Mol Biol, Ctr Comparat Genom & Evolutionary Bioinformat, Halifax, NS B3H 4R2, Canada

[7] Univ Toulouse, UPS CNRS, Lab Rech Sci Vegetales, 24 Chemin Borde Rouge,Auzeville BP 42617, F-31326 Castanet Tolosan, France

[8] Boyce Thompson Inst Plant Res, Ithaca, NY 14850 USA

[9] Cornell Univ, Plant Biol Sect, Ithaca, NY 14853 USA

[10] Univ Florida, Florida Museum Nat Hist, POB 117800, Gainesville, FL 32611 USA

[11] James D Watson Inst Genome Sci, Hangzhou 310058, Zhejiang, Peoples R China

[12] Univ Florida, Dept Biol, Gainesville, FL 32611 USA

[13] Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada

[14] Univ Alberta, Dept Biol Sci, Edmonton, AB T6G 2E9, Canada

[15] Univ Alberta, Dept Med, Edmonton, AB T6G 2E1, Canada

来源：

GIGASCIENCE | 2018年 / 7卷 / 03期

关键词：

10KP; plants; samples; genome sequencing; genomics; biodiversity; phylogenomics; open community; MGISEQ;

D O I：

10.1093/gigascience/giy013

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Understanding plant evolution and diversity in a phylogenomic context is an enormous challenge due, in part, to limited availability of genome-scale data across phylodiverse species. The 10KP (10,000 Plants) Genome Sequencing Project will sequence and characterize representative genomes from every major clade of embryophytes, green algae, and protists (excluding fungi) within the next 5 years. By implementing and continuously improving leading-edge sequencing technologies and bioinformatics tools, 10KP will catalogue the genome content of plant and protist diversity and make these data freely available as an enduring foundation for future scientific discoveries and applications. 10KP is structured as an international consortium, open to the global community, including botanical gardens, plant research institutes, universities, and private industry. Our immediate goal is to establish a policy framework for this endeavor, the principles of which are outlined here.

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