Altered exosomal microRNA profiles in bronchoalveolar lavage fluid can mediate metabolism in patients with Acinetobacter baumannii ventilator-associated pneumonia

被引:4
作者
Zhou, Bo [1 ]
Guo, Manyun [2 ]
Hao, Xiang [2 ]
Lou, Bowen [2 ]
Liu, Junhui [3 ]
She, Jianqing [2 ]
机构
[1] Xi An Jiao Tong Univ, Affiliated Hosp 1, Resp & Crit Care Med, Xian, Peoples R China
[2] Xi An Jiao Tong Univ, Affiliated Hosp 1, Cardiovasc Dept, Xian, Peoples R China
[3] Xi An Jiao Tong Univ, Affiliated Hosp 1, Diagnost Dept, Xian, Peoples R China
基金
中国国家自然科学基金;
关键词
Acinetobacter baumannii; exosomes; MicroRNA profiles; metabolomics; ventilator-associated pneumonia (VAP); METABOLOMICS TOOL; METABOANALYST; PROTECTS; EXPRESSION; INFECTION; PATTERNS; SERVER; SMPDB;
D O I
10.21037/atm-20-2375
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: Ventilator-associated pneumonia (VAP) is a major public health problem and is most commonly caused by Acinetobacter baumannii (Ab) infection. In our study, we investigated the profiles of exosomal microRNAs (miRNAs) extracted from the bronchoalveolar lavage fluid (BALF) and serum of patients with Acinetobacter baumannii ventilator-associated pneumonia (Ab-VAP). We also examined the serum metalx)lomic profiles of these patients. Our aim was to study the associations between lung tissuederived exosomal miRNAs and changes in global metabolism in patients with Ab-VAP. Methods: Consecutively sampled patients admitted to an intensive care unit (ICU) for pulmonary infection treatment were enrolled in this study. Demographic information and biochemical measurements were collected. Serum samples were obtained following overnight fasting on admission. Bronchoscopies were performed and BALF samples were collected from each patient. Exosomes were extracted using kits from System Biosciences (SBI) and miRNA sequencing was performed. Non-targeted metabolomics were used to express metabolic profiles. Results: We found significant changes in the miRNA profiles of patients with Ab-VAP; these changes occurred in both BALF exosomal miRNA and serum exosomal miRNA. Gene Ontology analysis further identified the function of miRNA in system metabolism. Serum metalxslomic profiles and ratios of biological significance were found to be differentially regulated in Ab-VAP patients. This differential regulation was correlated with the differential expression of miRNAs. Conclusions: Our data summarizes the dysregulation of serum metabolism and exosomal miRNA excretion that occurs in Ab-VAP patients. The correlation found between BALF exosomal miRNA and dysregulated metabolism, as indicated by the irregular expression of metabolites in the cellular metabolic pathway, highlights potential biomarkers for the diagnosis and treatment of Ab infection.
引用
收藏
页数:17
相关论文
共 38 条
[1]   The microbiota protects against respiratory infection via GM-CSF signaling [J].
Brown, Rebecca L. ;
Sequeira, Richard P. ;
Clarke, Thomas B. .
NATURE COMMUNICATIONS, 2017, 8
[2]   The regulation of host defences to infection by the microbiota [J].
Brown, Rebecca L. ;
Clarke, Thomas B. .
IMMUNOLOGY, 2017, 150 (01) :1-6
[3]   Extracellular Vesicle MicroRNA Transfer in Lung Diseases [J].
Chen, Jie ;
Hu, Chengping ;
Pan, Pinhua .
FRONTIERS IN PHYSIOLOGY, 2017, 8
[4]   Metabolomic Profiling of Infectious Parapneumonic Effusions Reveals Biomarkers for Guiding Management of Children with Streptococcus pneumoniae Pneumonia [J].
Chiu, Chih-Yung ;
Lin, Gigin ;
Cheng, Mei-Ling ;
Chiang, Meng-Han ;
Tsai, Ming-Han ;
Lai, Shen-Hao ;
Wong, Kin-Sun ;
Hsieh, Sen-Yung .
SCIENTIFIC REPORTS, 2016, 6
[5]   SMPDB: The Small Molecule Pathway Database [J].
Frolkis, Alex ;
Knox, Craig ;
Lim, Emilia ;
Jewison, Timothy ;
Law, Vivian ;
Hau, David D. ;
Liu, Phillip ;
Gautam, Bijaya ;
Ly, Son ;
Guo, An Chi ;
Xia, Jianguo ;
Liang, Yongjie ;
Shrivastava, Savita ;
Wishart, David S. .
NUCLEIC ACIDS RESEARCH, 2010, 38 :D480-D487
[6]   Acinetobacter baumannii Ventilator-Associated Pneumonia: Clinical Efficacy of Combined Antimicrobial Therapy and in vitro Drug Sensitivity Test Results [J].
Huang, Yuqin ;
Zhou, Quan ;
Wang, Wenguo ;
Huang, Qiang ;
Liao, Juan ;
Li, Junyi ;
Long, Lei ;
Ju, Tao ;
Zhang, Quan ;
Wang, Hanqin ;
Xu, Huaqiang ;
Tu, Mingli .
FRONTIERS IN PHARMACOLOGY, 2019, 10
[7]   SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database [J].
Jewison, Timothy ;
Su, Yilu ;
Disfany, Fatemeh Miri ;
Liang, Yongjie ;
Knox, Craig ;
Maciejewski, Adam ;
Poelzer, Jenna ;
Huynh, Jessica ;
Zhou, You ;
Arndt, David ;
Djoumbou, Yannick ;
Liu, Yifeng ;
Deng, Lu ;
Guo, An Chi ;
Han, Beomsoo ;
Pon, Allison ;
Wilson, Michael ;
Rafatnia, Shahrzad ;
Liu, Philip ;
Wishart, David S. .
NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D478-D484
[8]   Identification of miRNA-rich vesicles in bronchoalveolar lavage fluid: Insights into the function and heterogeneity of extracellular vesicles [J].
Lee, Heedoo ;
Groot, Michael ;
Pinilla-Vera, Mayra ;
Fredenburgh, Laura E. ;
Jin, Yang .
JOURNAL OF CONTROLLED RELEASE, 2019, 294 :43-52
[9]   Altered microRNA profiles in bronchoalveolar lavage fluid exosomes in asthmatic patients [J].
Levanen, Bettina ;
Bhakta, Nirav R. ;
Paredes, Patricia Torregrosa ;
Barbeau, Rebecca ;
Hiltbrunner, Stefanie ;
Pollack, Joshua L. ;
Skold, C. Magnus ;
Svartengren, Magnus ;
Grunewald, Johan ;
Gabrielsson, Susanne ;
Eklund, Anders ;
Larsson, Britt-Marie ;
Woodruff, Prescott G. ;
Erle, David J. ;
Wheelock, Asa M. .
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 2013, 131 (03) :894-+
[10]   TranslatomeDB: a comprehensive database and cloud-based analysis platform for translatome sequencing data [J].
Liu, Wanting ;
Xiang, Lunping ;
Zheng, Tingkai ;
Jin, Jingjie ;
Zhang, Gong .
NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) :D206-D212