Multivalent Small-Molecule Pan-RAS Inhibitors

被引:213
作者
Welsch, Matthew E. [1 ]
Kaplan, Anna [2 ]
Chambers, Jennifer M. [2 ]
Stokes, Michael E. [2 ,4 ]
Bos, Pieter H. [2 ]
Zask, Arie [2 ]
Zhang, Yan [1 ]
Sanchez-Martin, Marta [3 ]
Badgley, Michael A. [5 ]
Huang, Christine S. [2 ]
Tran, Timothy H. [2 ]
Akkiraju, Hemanth [2 ,6 ]
Brown, Lewis M. [2 ,6 ]
Nandakumar, Renu [7 ]
Cremers, Serge [4 ,7 ]
Yang, Wan Seok [8 ]
Tong, Liang [2 ]
Olive, Kenneth P. [4 ,5 ]
Ferrando, Adolfo [3 ,4 ,9 ]
Stockwell, Brent R. [1 ,2 ]
机构
[1] Columbia Univ, Dept Chem, New York, NY 10027 USA
[2] Columbia Univ, Dept Biol Sci, New York, NY 10027 USA
[3] Columbia Univ, Med Ctr, Inst Canc Genet, New York, NY 10032 USA
[4] Columbia Univ, Med Ctr, Dept Pathol, New York, NY 10032 USA
[5] Columbia Univ, Dept Med, Med Ctr, Div Digest & Liver Dis, New York, NY 10032 USA
[6] Columbia Univ, Quantitat Prote & Metabol Ctr, New York, NY 10027 USA
[7] Columbia Univ, Med Ctr, Irving Inst Clin & Translat Res, New York, NY 10032 USA
[8] St Johns Univ, Dept Biol Sci, Queens, NY 11439 USA
[9] Columbia Univ, Med Ctr, Dept Pediat, New York, NY 10032 USA
基金
澳大利亚国家健康与医学研究理事会;
关键词
MEDIATED NUCLEOTIDE EXCHANGE; PROTEIN-PROTEIN INTERACTIONS; K-RAS; STRUCTURAL BASIS; CANCER-THERAPY; TARGETING RAS; CELLS; ACTIVATION; DISCOVERY; ONCOGENES;
D O I
10.1016/j.cell.2017.02.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Design of small molecules that disrupt protein-protein interactions, including the interaction of RAS proteins and their effectors, may provide chemical probes and therapeutic agents. We describe here the synthesis and testing of potential small-molecule pan-RAS ligands, which were designed to interact with adjacent sites on the surface of oncogenic KRAS. One compound, termed 3144, was found to bind to RAS proteins using microscale thermophoresis, nuclear magnetic resonance spectroscopy, and isothermal titration calorimetry and to exhibit lethality in cells partially dependent on expression of RAS proteins. This compound was metabolically stable in liver microsomes and displayed anti-tumor activity in xenograft mouse cancer models. These findings suggest that pan-RAS inhibition may be an effective therapeutic strategy for some cancers and that structure-based design of small molecules targeting multiple adjacent sites to create multivalent inhibitors may be effective for some proteins.
引用
收藏
页码:878 / +
页数:41
相关论文
共 55 条
[1]   PHENIX:: building new software for automated crystallographic structure determination [J].
Adams, PD ;
Grosse-Kunstleve, RW ;
Hung, LW ;
Ioerger, TR ;
McCoy, AJ ;
Moriarty, NW ;
Read, RJ ;
Sacchettini, JC ;
Sauter, NK ;
Terwilliger, TC .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :1948-1954
[2]   Small-Molecule Inhibitors of Protein-Protein Interactions: Progressing toward the Reality [J].
Arkin, Michelle R. ;
Tang, Yinyan ;
Wells, James A. .
CHEMISTRY & BIOLOGY, 2014, 21 (09) :1102-1114
[3]   Small-molecule inhibitors of protein-protein interactions: Progressing towards the dream [J].
Arkin, MR ;
Wells, JA .
NATURE REVIEWS DRUG DISCOVERY, 2004, 3 (04) :301-317
[4]   Both p16Ink4a and the p19Arf-p53 pathway constrain progression of pancreatic adenocarcinoma in the mouse [J].
Bardeesy, N ;
Aguirre, AJ ;
Chu, GC ;
Cheng, KH ;
Lopez, LV ;
Hezel, AF ;
Feng, B ;
Brennan, C ;
Weissleder, R ;
Mahmood, U ;
Hanahan, D ;
Redston, MS ;
Chin, L ;
DePinho, RA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (15) :5947-5952
[5]   Quantitative structure-activity analysis correlating Ras/Raf interaction in vitro to Raf activation in vivo [J].
Block, C ;
Janknecht, R ;
Herrmann, C ;
Nassar, N ;
Wittinghofer, A .
NATURE STRUCTURAL BIOLOGY, 1996, 3 (03) :244-251
[6]   Approach for targeting Ras with small molecules that activate SOS-mediated nucleotide exchange [J].
Burns, Michael C. ;
Sun, Qi ;
Daniels, R. Nathan ;
Camper, DeMarco ;
Kennedy, J. Phillip ;
Phan, Jason ;
Olejniczak, Edward T. ;
Lee, Taekyu ;
Waterson, Alex G. ;
Rossanese, Olivia W. ;
Fesik, Stephen W. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (09) :3401-3406
[7]   Improvements in survival and clinical benefit with gemcitabine as first-line therapy for patients with advanced pancreas cancer: A randomized trial [J].
Burris, HA ;
Moore, MJ ;
Andersen, J ;
Green, MR ;
Rothenberg, ML ;
Madiano, MR ;
Cripps, MC ;
Portenoy, RK ;
Storniolo, AM ;
Tarassoff, P ;
Nelson, R ;
Dorr, FA ;
Stephens, CD ;
VanHoff, DD .
JOURNAL OF CLINICAL ONCOLOGY, 1997, 15 (06) :2403-2413
[8]   Leukemia-associated NOTCH1 alleles are weak tumor initiators but accelerate K-ras-initiated leukemia [J].
Chiang, Mark Y. ;
Xu, Lanwei ;
Shestova, Olga ;
Histen, Gavin ;
L'Heureux, Sarah ;
Romany, Candice ;
Childs, M. Eden ;
Gimotty, Phyllis A. ;
Aster, Jon C. ;
Pear, Warren S. .
JOURNAL OF CLINICAL INVESTIGATION, 2008, 118 (09) :3181-3194
[9]  
Colicelli John, 2004, Sci STKE, V2004, pRE13, DOI 10.1126/stke.2502004re13
[10]   Methods to measure the intracellular concentration of unlabeled compounds within cultured cells using liquid chromatography/tandem mass spectrometry [J].
Colletti, Lynn M. ;
Liu, Yaya ;
Koev, Gennadiy ;
Richardson, Paul L. ;
Chen, Chih-Ming ;
Kati, Warren .
ANALYTICAL BIOCHEMISTRY, 2008, 383 (02) :186-193