How Native and Non-Native Cations Bind and Modulate the Properties of GTP/ATP

被引:9
|
作者
Dudev, Todor [1 ]
Grauffel, Cedric [2 ]
Hsu, Shang-Te Danny [3 ]
Lim, Carmay [2 ,4 ]
机构
[1] Sofia Univ, Fac Chem & Pharm, Sofia 1164, Bulgaria
[2] Acad Sinica, Inst Biomed Sci, Taipei 11529, Taiwan
[3] Acad Sinica, Inst Biol Chem, Taipei 11529, Taiwan
[4] Natl Tsing Hua Univ, Dept Chem, Hsinchu 300, Taiwan
基金
欧盟地平线“2020”;
关键词
METAL COORDINATION-NUMBER; ATP HYDROLYSIS; POSSIBLE MECHANISM; BIOLOGICAL ACTION; LITHIUM; COMPETITION; MAGNESIUM; MODEL; MG2+; LI+;
D O I
10.1021/acs.jctc.8b00259
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Adenosine triphosphate (ATP) and guanosine triphosphate (GTP) exist in physiological solution mostly bound to cations. Interestingly, their cellular Mg2+-bound forms have been shown to bind Li+, a first-line drug for bipolar disorder. However, solution structures of NTP/NDP (N = A or G) bound to Li(+)and/or Mg(2+)have not been solved, thus precluding knowledge of how the native Mg2+-bound cofactor conformation changes upon binding non-native Li(+)and/or switching its environment from aqueous solution to proteins. Using well-calibrated methods that reproduce experimental structural and thermodynamic parameters of several Mg2+/Li+-nucleotide complexes, we show that the native NTP/NDP-Mg(2+)cofactor adopts a "folded" conformation in water that remains unperturbed upon Li(+)binding. We further show that the ATP-binding pockets of receptors such as P2X are complementary in shape to the "folded" ATP-Mg(2+)solution structure, whereas the elongated GTP-binding pockets found in G-proteins necessitate the GTP-Mg(2+)cofactor to undergo a conformational change from its "folded" conformation in solution to an extended one upon G-protein binding. Implications of the findings on how Li+, in its bound state, can manifest its therapeutic effects are discussed.
引用
收藏
页码:3311 / 3320
页数:10
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