Rates of niche and phenotype evolution lag behind diversification in a temperate radiation

被引:114
作者
Folk, Ryan A. [1 ]
Stubbs, Rebecca L. [1 ,2 ,3 ]
Mort, Mark E. [4 ]
Cellinese, Nico [1 ,5 ,6 ]
Allen, Julie M. [1 ,7 ]
Soltis, Pamela S. [1 ,5 ,6 ]
Soltis, Douglas E. [1 ,2 ,5 ,6 ]
Guralnick, Robert P. [1 ,5 ,6 ]
机构
[1] Florida Museum Nat Hist, Gainesville, FL 32611 USA
[2] Univ Florida, Dept Biol, Gainesville, FL 32611 USA
[3] Univ Zurich, Dept Systemat & Evolutionary Bot, CH-8008 Zurich, Switzerland
[4] Univ Kansas, Dept Ecol & Evolutionary Biol, Lawrence, KS 66045 USA
[5] Univ Florida, Genet Inst, Gainesville, FL 32610 USA
[6] Univ Florida, Biodivers Inst, Gainesville, FL 32603 USA
[7] Univ Nevada, Dept Biol, Reno, NV 89557 USA
基金
美国国家科学基金会;
关键词
diversification; niche; phenotype; radiation; angiosperms; BODY-SIZE EVOLUTION; SPECIES DIVERSIFICATION; SPECIATION RATES; DEPENDENT DIVERSIFICATION; R PACKAGE; PHYLOGENOMICS; TAXA; LIKELIHOOD; DIVERSITY; THOUSANDS;
D O I
10.1073/pnas.1817999116
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Environmental change can create opportunities for increased rates of lineage diversification, but continued species accumulation has been hypothesized to lead to slowdowns via competitive exclusion and niche partitioning. Such density-dependent models imply tight linkages between diversification and trait evolution, but there are plausible alternative models. Little is known about the association between diversification and key ecological and phenotypic traits at broad phylogenetic and spatial scales. Do trait evolutionary rates coincide with rates of diversification, are there lags among these rates, or is diversification niche-neutral? To address these questions, we combine a deeply sampled phylogeny for a major flowering plant clade-Saxifragales-with phenotype and niche data to examine temporal patterns of evolutionary rates. The considerable phenotypic and habitat diversity of Saxifragales is greatest in temperate biomes. Global expansion of these habitats since the mid-Miocene provided ecological opportunities that, with density-dependent adaptive radiation, should result in simultaneous rate increases for diversification, niche, and phenotype, followed by decreases with habitat saturation. Instead, we find that these rates have significantly different timings, with increases in diversification occurring at the mid-Miocene Climatic Optimum (similar to 15 Mya), followed by increases in niche and phenotypic evolutionary rates by similar to 5 Mya; all rates increase exponentially to the present. We attribute this surprising lack of temporal coincidence to initial niche-neutral diversification followed by ecological and phenotypic divergence coincident with more extreme cold and dry habitats that proliferated into the Pleistocene. A lack of density-dependence contrasts with investigations of other cosmopolitan lineages, suggesting alternative patterns may be common in the diversification of temperate lineages.
引用
收藏
页码:10874 / 10882
页数:9
相关论文
共 100 条
[1]   Increasing morphological complexity in multiple parallel lineages of the Crustacea [J].
Adamowicz, Sarah J. ;
Purvis, Andy ;
Wills, Matthew A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (12) :4786-4791
[2]   Are rates of species diversification correlated with rates of morphological evolution? [J].
Adams, Dean C. ;
Berns, Chelsea M. ;
Kozak, Kenneth H. ;
Wiens, John J. .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2009, 276 (1668) :2729-2738
[3]   Clade diversification dynamics and the biotic and abiotic controls of speciation and extinction rates [J].
Aguilee, Robin ;
Gascuel, Fanny ;
Lambert, Amaury ;
Ferriere, Regis .
NATURE COMMUNICATIONS, 2018, 9
[4]   NEW LOOK AT STATISTICAL-MODEL IDENTIFICATION [J].
AKAIKE, H .
IEEE TRANSACTIONS ON AUTOMATIC CONTROL, 1974, AC19 (06) :716-723
[5]   aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data [J].
Allen, Julie M. ;
LaFrance, Raphael ;
Folk, Ryan A. ;
Johnson, Kevin P. ;
Guralnick, Robert P. .
EVOLUTIONARY BIOINFORMATICS, 2018, 14
[6]   Phylogenomics from Whole Genome Sequences Using aTRAM [J].
Allen, Julie M. ;
Boyd, Bret ;
Nam-Phuong Nguyen ;
Vachaspati, Pranjal ;
Warnow, Tandy ;
Huang, Daisie I. ;
Grady, Patrick G. S. ;
Bell, Kayce C. ;
Cronk, Quentin C. B. ;
Mugisha, Lawrence ;
Pittendrigh, Barry R. ;
Soledad Leonardi, M. ;
Reed, David L. ;
Johnson, Kevin P. .
SYSTEMATIC BIOLOGY, 2017, 66 (05) :786-798
[7]   aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data [J].
Allen, Julie M. ;
Huang, Daisie I. ;
Cronk, Quentin C. ;
Johnson, Kevin P. .
BMC BIOINFORMATICS, 2015, 16
[8]   The geography and ecology of plant speciation: range overlap and niche divergence in sister species [J].
Anacker, Brian L. ;
Strauss, Sharon Y. .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2014, 281 (1778)
[9]   The role of Pleistocene refugia and rivers in shaping gorilla genetic diversity in central Africa [J].
Anthony, Nicola M. ;
Johnson-Bawe, Mireille ;
Jeffery, Kathryn ;
Clifford, Stephen L. ;
Abernethy, Kate A. ;
Tutin, Caroline E. ;
Lahm, Sally A. ;
White, Lee J. T. ;
Utley, John F. ;
Wickings, E. Jean ;
Bruford, Michael W. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (51) :20432-20436
[10]   Contemporaneous and recent radiations of the world's major succulent plant lineages [J].
Arakaki, Monica ;
Christin, Pascal-Antoine ;
Nyffeler, Reto ;
Lendel, Anita ;
Eggli, Urs ;
Ogburn, R. Matthew ;
Spriggs, Elizabeth ;
Moore, Michael J. ;
Edwards, Erika J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (20) :8379-8384