The structure of the Mycobacterium smegmatis trehalose synthase reveals an unusual active site configuration and acarbose-binding mode†

被引:42
作者
Caner, Sami [1 ]
Nham Nguyen [1 ]
Aguda, Adeleke [1 ]
Zhang, Ran [2 ]
Pan, Yuan T. [3 ]
Withers, Stephen G. [1 ,2 ]
Brayer, Gary D. [1 ]
机构
[1] Univ British Columbia, Dept Biochem & Mol Biol, Vancouver, BC V6T 1Z3, Canada
[2] Univ British Columbia, Dept Chem, Ctr High Throughput Biol CHiBi, Vancouver, BC V6T 1Z1, Canada
[3] Univ Arkansas Med Sci, Dept Biochem & Mol Biol, Little Rock, AR 72205 USA
基金
加拿大健康研究院;
关键词
drug design; enzyme inhibition; GH13 glycoside hydrolase; trehalose synthase; tuberculosis; ALPHA-AMYLASE FAMILY; METAL-LIGAND INTERACTIONS; BIOSYNTHESIS GENES; CLONING; MECHANISM; GEOMETRY; GLYCOGEN; SUBFAMILIES; SPECIFICITY; ACTIVATION;
D O I
10.1093/glycob/cwt044
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Trehalose synthase (TreS) catalyzes the reversible conversion of maltose into trehalose in mycobacteria as one of three biosynthetic pathways to this nonreducing disaccharide. Given the importance of trehalose to survival of mycobacteria, there has been considerable interest in understanding the enzymes involved in its production; indeed the structures of the key enzymes in the other two pathways have already been determined. Herein, we present the first structure of TreS from Mycobacterium smegmatis, thereby providing insights into the catalytic machinery involved in this intriguing intramolecular reaction. This structure, which is of interest both mechanistically and as a potential pharmaceutical target, reveals a narrow and enclosed active site pocket within which intramolecular substrate rearrangements can occur. We also present the structure of a complex of TreS with acarbose, revealing a hitherto unsuspected oligosaccharide-binding site within the C-terminal domain. This may well provide an anchor point for the association of TreS with glycogen, thereby enhancing its role in glycogen biosynthesis and degradation.
引用
收藏
页码:1075 / 1083
页数:9
相关论文
共 59 条
[1]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[2]   STRUCTURE OF CHICKEN MUSCLE TRIOSE PHOSPHATE ISOMERASE DETERMINED CRYSTALLOGRAPHICALLY AT 2.5A RESOLUTION USING AMINO-ACID SEQUENCE DATA [J].
BANNER, DW ;
BLOOMER, AC ;
PETSKO, GA ;
PHILLIPS, DC ;
POGSON, CI ;
WILSON, IA ;
CORRAN, PH ;
FURTH, AJ ;
MILMAN, JD ;
OFFORD, RE ;
PRIDDLE, JD ;
WALEY, SG .
NATURE, 1975, 255 (5510) :609-614
[3]   Drug sensitivity and environmental adaptation of mycobacterial cell wall components [J].
Barry, CE ;
Mdluli, K .
TRENDS IN MICROBIOLOGY, 1996, 4 (07) :275-281
[4]   Mycolic acids: Structure, biosynthesis and physiological functions [J].
Barry, CE ;
Lee, RE ;
Mdluli, K ;
Sampson, AE ;
Schroeder, BG ;
Slayden, RA ;
Yuan, Y .
PROGRESS IN LIPID RESEARCH, 1998, 37 (2-3) :143-179
[5]   Carbohydrate-binding modules: fine-tuning polysaccharide recognition [J].
Boraston, AB ;
Bolam, DN ;
Gilbert, HJ ;
Davies, GJ .
BIOCHEMICAL JOURNAL, 2004, 382 (03) :769-781
[6]   MECHANISM OF ENZYME ACTION [J].
BOYER, PD .
ANNUAL REVIEW OF BIOCHEMISTRY, 1960, 29 :15-44
[7]   Subsite mapping of the human pancreatic α-amylase active site through structural, kinetic, and mutagenesis techniques [J].
Brayer, GD ;
Sidhu, G ;
Maurus, R ;
Rydberg, EH ;
Braun, C ;
Wang, YL ;
Nguyen, NT ;
Overall, CH ;
Withers, SG .
BIOCHEMISTRY, 2000, 39 (16) :4778-4791
[8]   THE STRUCTURE OF HUMAN PANCREATIC ALPHA-AMYLASE AT 1.8 ANGSTROM RESOLUTION AND COMPARISONS WITH RELATED ENZYMES [J].
BRAYER, GD ;
LUO, YG ;
WITHERS, SG .
PROTEIN SCIENCE, 1995, 4 (09) :1730-1742
[9]   The carbohydrate-binding module family 20-diversity, structure, and function [J].
Christiansen, Camilla ;
Abou Hachem, Maher ;
Janecek, Stefan ;
Vikso-Nielsen, Anders ;
Blennow, Andreas ;
Svensson, Birte .
FEBS JOURNAL, 2009, 276 (18) :5006-5029
[10]   PRESERVATION OF MEMBRANES IN ANHYDROBIOTIC ORGANISMS - THE ROLE OF TREHALOSE [J].
CROWE, JH ;
CROWE, LM ;
CHAPMAN, D .
SCIENCE, 1984, 223 (4637) :701-703