"dendRoAnalyst": A tool for processing and analysing dendrometer data

被引:19
作者
Aryal, Sugam [1 ]
Haeusser, Martin [1 ]
Griessinger, Jussi [1 ]
Fan, Zexin [2 ]
Braeuning, Achim [1 ]
机构
[1] Friedrich Alexander Univ Erlangen Nurnberg, Inst Geog, Wetterkreuz 15, D-91058 Erlangen, Germany
[2] Chinese Acad Sci, Key Lab Trop Forest Ecol, Xishuangbanna Trop Bot Garden, Mengla 666303, Peoples R China
关键词
Tree-growth monitoring; Stem-variation analysis; R-package; Dendrometer; Stem-cycle approach; Zero-growth approach;
D O I
10.1016/j.dendro.2020.125772
中图分类号
S7 [林业];
学科分类号
0829 ; 0907 ;
摘要
Dendrometers are vital tools for studying the response of trees to intra-annual environmental changes in different temporal resolutions, ranging from hourly, daily to weekly time resolution. Dendrometers are increasingly used in forest management and tree physiological studies. Besides the data analysis, data processing is also challenging, time-consuming and potentially error-prone due to the immense number of measurements generated by self-registering electronic dendrometers. We present the package 'dendRoAnalyst' based on R statistical software to process and analyse dendrometer data using various approaches. This package offers algorithms for handling and pre-cleaning of dendrometer data before the application of subsequent data analytical steps. This includes identifying and erasing artefacts in dendrometer datasets not related to actual stem circumference change, identifying data gaps within records, and the possibility of change(s) in temporal resolution. Furthermore, the package can calculate different daily statistics of dendrometer data, including the daily amplitude of tree growth. The package dendRoAnalyst is therefore intended to facilitate researchers with a collection of functions for handling and analysing dendrometer data.
引用
收藏
页数:10
相关论文
共 18 条
[1]  
Clark NA, 2000, FOREST SCI, V46, P570
[2]   Daily weather response of balsam fir (Abies balsamea (L.) Mill.) stem radius increment from dendrometer analysis in the boreal forests of Quebec (Canada) [J].
Deslauriers, A ;
Morin, H ;
Urbinati, C ;
Carrer, M .
TREES-STRUCTURE AND FUNCTION, 2003, 17 (06) :477-484
[3]   Using simple causal modeling to understand how water and temperature affect daily stem radial variation in trees [J].
Deslauriers, Annie ;
Anfodillo, Tommaso ;
Rossi, Sergio ;
Carraro, Vinicio .
TREE PHYSIOLOGY, 2007, 27 (08) :1125-1136
[4]   A three-step procedure in SAS to analyze the time series from automatic dendrometers [J].
Deslauriers, Annie ;
Rossi, Sergio ;
Turcotte, Audrey ;
Morin, Hubert ;
Krause, Cornelia .
DENDROCHRONOLOGIA, 2011, 29 (03) :151-161
[5]   Daily stem growth patterns in irrigated Eucalyptus globulus and E-nitens in relation to climate [J].
Downes, G ;
Beadle, C ;
Worledge, D .
TREES-STRUCTURE AND FUNCTION, 1999, 14 (02) :102-111
[6]  
Grosenbaugh L.R., 1963, FOREST SCI, V9, P1, DOI [10.1093/forestscience/9.s1.a0001, DOI 10.1093/FORESTSCIENCE/9.S1.A0001]
[7]  
HERZOG KM, 1995, TREES-STRUCT FUNCT, V10, P94, DOI 10.1007/BF00192189
[8]   Climatic drivers of hourly to yearly tree radius variations along a 6°C natural warming gradient [J].
King, Gregory ;
Fonti, Patrick ;
Nievergelt, Daniel ;
Buentgen, Ulf ;
Frank, David .
AGRICULTURAL AND FOREST METEOROLOGY, 2013, 168 :36-46
[9]  
R Core Team, 2019, R LANG ENV STAT COMP
[10]   Tree Circumference Changes and Species-Specific Growth Recovery After Extreme Dry Events in a Montane Rainforest in Southern Ecuador [J].
Raffelsbauer, Volker ;
Spannl, Susanne ;
Pena, Kelly ;
Pucha-Cofrep, Darwin ;
Steppe, Kathy ;
Braeuning, Achim .
FRONTIERS IN PLANT SCIENCE, 2019, 10