Insights From Molecular Dynamics Simulations of a Number of G-Protein Coupled Receptor Targets for the Treatment of Pain and Opioid Use Disorders

被引:17
作者
Ribeiro, Joao Marcelo Lamim [1 ]
Filizola, Marta [1 ]
机构
[1] Icahn Sch Med Mt Sinai, Dept Pharmacol Sci, New York, NY 10029 USA
来源
FRONTIERS IN MOLECULAR NEUROSCIENCE | 2019年 / 12卷
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
GPCRs; opioid crisis; molecular dynamics; pain; opioid use disorder; NEGATIVE ALLOSTERIC MODULATOR; CRYSTAL-STRUCTURE; FORCE-FIELDS; DOPAMINE D-3; LIGAND; ANTAGONIST; ACTIVATION; DISCOVERY; MECHANISM; BINDING;
D O I
10.3389/fnmol.2019.00207
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Effective treatments for pain management remain elusive due to the dangerous side-effects of current gold-standard opioid analgesics, including the respiratory depression that has led to skyrocketing death rates from opioid overdoses over the past decade. In an attempt to address the horrific opioid crisis worldwide, the National Institute on Drug Abuse has recently proposed boosting research on specific pharmacological mechanisms mediated by a number of G protein-coupled receptors (GPCRs). This research is expected to expedite the discovery of medications for opioid overdose and opioid use disorders, leading toward a safer and more effective treatment of pain. Here, we review mechanistic insights from recent all-atom molecular dynamics simulations of a specific subset of GPCRs for which high-resolution experimental structures are available, including opioid, cannabinoid, orexin, metabotropic glutamate, and dopamine receptor subtypes.
引用
收藏
页数:13
相关论文
共 78 条
  • [1] How Does Agonist and Antagonist Binding Lead to Different Conformational Ensemble Equilibria of the κ-Opioid Receptor: Insight from Long-Time Gaussian Accelerated Molecular Dynamics Simulation
    An, Xiaoli
    Bai, Qifeng
    Bing, Zhitong
    Zhou, Shuangyan
    Shi, Danfeng
    Liu, Huanxiang
    Yao, Xiaojun
    [J]. ACS CHEMICAL NEUROSCIENCE, 2019, 10 (03): : 1575 - 1584
  • [2] [Anonymous], 2017, WID RANG ONL DAT EP
  • [3] Computational studies on horseshoe shape pocket of human orexin receptor type 2 and boat conformation of suvorexant by molecular dynamics simulations
    Bai, Qifeng
    Perez-Sanchez, Horacio
    Shi, Zhuoyu
    Li, Lanlan
    Shi, Danfeng
    Liu, Huanxiang
    Yao, Xiaojun
    [J]. CHEMICAL BIOLOGY & DRUG DESIGN, 2018, 92 (01) : 1221 - 1231
  • [4] Investigation of allosteric modulation mechanism of metabotropic glutamate receptor 1 by molecular dynamics simulations, free energy and weak interaction analysis
    Bai, Qifeng
    Yao, Xiaojun
    [J]. SCIENTIFIC REPORTS, 2016, 6
  • [5] Ballesteros J. A., 1995, Methods in Neurosciences, V25, P366, DOI [10.1016/S1043-9471(05)80049-7, DOI 10.1016/S1043-9471(05)80049-7]
  • [6] Molecular mechanisms of allosteric probe dependence in μ opioid receptor
    Bartuzi, Damian
    Kaczor, Agnieszka A.
    Matosiuk, Dariusz
    [J]. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2019, 37 (01) : 36 - 47
  • [7] Enhanced sampling techniques in molecular dynamics simulations of biological systems
    Bernardi, Rafael C.
    Melo, Marcelo C. R.
    Schulten, Klaus
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 2015, 1850 (05): : 872 - 877
  • [8] Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone φ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
    Best, Robert B.
    Zhu, Xiao
    Shim, Jihyun
    Lopes, Pedro E. M.
    Mittal, Jeetain
    Feig, Michael
    MacKerell, Alexander D., Jr.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (09) : 3257 - 3273
  • [9] Enhanced morphine analgesia in mice lacking β-arrestin 2
    Bohn, LM
    Lefkowitz, RJ
    Gainetdinov, RR
    Peppel, K
    Caron, MG
    Lin, FT
    [J]. SCIENCE, 1999, 286 (5449) : 2495 - 2498
  • [10] Discovery, Synthesis, and Molecular Pharmacology of Selective Positive Allosteric Modulators of the δ-Opioid Receptor
    Burford, Neil T.
    Livingston, Kathryn E.
    Canals, Meritxell
    Ryan, Molly R.
    Budenholzer, Lauren M. L.
    Han, Ying
    Shang, Yi
    Herbst, John J.
    O'Connell, Jonathan
    Banks, Martyn
    Zhang, Litao
    Filizola, Marta
    Bassoni, Daniel L.
    Wehrman, Tom S.
    Christopoulos, Arthur
    Traynor, John R.
    Gerritz, Samuel W.
    Alt, Andrew
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2015, 58 (10) : 4220 - 4229