Towards the construction of high-quality mutagenesis libraries

被引:1
作者
Li, Heng [1 ,3 ]
Li, Jing [1 ,3 ]
Jin, Ruinan [1 ]
Chen, Wei [1 ]
Liang, Chaoning [1 ]
Wu, Jieyuan [1 ,3 ]
Jin, Jian-Ming [2 ]
Tang, Shuang-Yan [1 ]
机构
[1] Chinese Acad Sci, CAS Key Lab Microbial Physiol & Metab Engn, Inst Microbiol, State Key Lab Microbial Resources, Beijing 100101, Peoples R China
[2] Beijing Technol & Business Univ, Beijing Key Lab Plant Resources Res & Dev, Beijing 100048, Peoples R China
[3] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
基金
中国国家自然科学基金;
关键词
Directed evolution; Multiple-plasmid transformant; Mutagenesis library; Transformation; Transformation efficiency; DIRECTED EVOLUTION; ESCHERICHIA-COLI; PLASMID INCOMPATIBILITY; PROTEIN DESIGN; TRANSFORMATION; COTRANSFORMATION; CLONING; GENES; CELLS;
D O I
10.1007/s10529-018-2559-7
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
To improve the quality of mutagenesis libraries in directed evolution strategy. In the process of library transformation, transformants which have been shown to take up more than one plasmid might constitute more than 20% of the constructed library, thereby extensively impairing the quality of the library. We propose a practical transformation method to prevent the occurrence of multiple-plasmid transformants while maintaining high transformation efficiency. A visual library model containing plasmids expressing different fluorescent proteins was used. Multiple-plasmid transformants can be reduced through optimizing plasmid DNA amount used for transformation based on the positive correlation between the occurrence frequency of multiple-plasmid transformants and the logarithmic ratio of plasmid molecules to competent cells. This method provides a simple solution for a seemingly common but often neglected problem, and should be valuable for improving the quality of mutagenesis libraries to enhance the efficiency of directed evolution strategies.
引用
收藏
页码:1101 / 1107
页数:7
相关论文
共 25 条
[1]   Methodologies to increase the transformation efficiencies and the range of bacteria that can be transformed [J].
Aune, Trond Erik Vee ;
Aachmann, Finn Lillelund .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2010, 85 (05) :1301-1313
[2]   Genomic profiling of iron-responsive genes in Salmonella enterica serovar typhimurium by high-throughput screening of a random promoter library [J].
Bjarnason, J ;
Southward, CM ;
Surette, MG .
JOURNAL OF BACTERIOLOGY, 2003, 185 (16) :4973-4982
[3]   Improved biocatalysts by directed evolution and rational protein design [J].
Bornscheuer, UT ;
Pohl, M .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2001, 5 (02) :137-143
[4]   ANALYSIS OF GENE-CONTROL SIGNALS BY DNA-FUSION AND CLONING IN ESCHERICHIA-COLI [J].
CASADABAN, MJ ;
COHEN, SN .
JOURNAL OF MOLECULAR BIOLOGY, 1980, 138 (02) :179-207
[5]   Metabolic engineering and directed evolution for the production of pharmaceuticals [J].
Chartrain, M ;
Salmon, PM ;
Robinson, DK ;
Buckland, BC .
CURRENT OPINION IN BIOTECHNOLOGY, 2000, 11 (02) :209-214
[6]   Design of an ectoine-responsive AraC mutant and its application in metabolic engineering of ectoine biosynthesis [J].
Chen, Wei ;
Zhang, Shan ;
Jiang, Peixia ;
Yao, Jun ;
He, Yongzhi ;
Chen, Lincai ;
Gui, Xiwu ;
Dong, Zhiyang ;
Tang, Shuang-Yan .
METABOLIC ENGINEERING, 2015, 30 :149-155
[7]   ONE-STEP PREPARATION OF COMPETENT ESCHERICHIA-COLI - TRANSFORMATION AND STORAGE OF BACTERIAL-CELLS IN THE SAME SOLUTION [J].
CHUNG, CT ;
NIEMELA, SL ;
MILLER, RH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1989, 86 (07) :2172-2175
[8]   Design, construction and characterization of a set of insulated bacterial promoters [J].
Davis, Joseph H. ;
Rubin, Adam J. ;
Sauer, Robert T. .
NUCLEIC ACIDS RESEARCH, 2011, 39 (03) :1131-1141
[9]   MECHANISM OF CONTROL OF DNA-REPLICATION AND INCOMPATIBILITY IN COLE1-TYPE PLASMIDS - A REVIEW [J].
DAVISON, J .
GENE, 1984, 28 (01) :1-15
[10]   COTRANSFORMATION WITH AUTONOMOUSLY-REPLICATING HELPER PLASMIDS FACILITATES GENE CLONING FROM AN ASPERGILLUS-NIDULANS GENE LIBRARY [J].
GEMS, DH ;
CLUTTERBUCK, AJ .
CURRENT GENETICS, 1993, 24 (06) :520-524