共 65 条
Low- and high-density forms of liquid water revealed by a new medium-range order descriptor
被引:18
作者:

Faccio, Chiara
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Scuola Normale Super Pisa, Piazza Cavalieri 7, I-56126 Pisa, Italy Scuola Normale Super Pisa, Piazza Cavalieri 7, I-56126 Pisa, Italy

Benzi, Michele
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机构:
Scuola Normale Super Pisa, Piazza Cavalieri 7, I-56126 Pisa, Italy Scuola Normale Super Pisa, Piazza Cavalieri 7, I-56126 Pisa, Italy

Zanetti-Polzi, Laura
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机构:
CNR, Ctr S3, Inst Nanosci, Via Campi 213-A, I-41125 Modena, Italy Scuola Normale Super Pisa, Piazza Cavalieri 7, I-56126 Pisa, Italy

Daidone, Isabella
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机构:
Univ LAquila, Dept Phys & Chem Sci, Via Vetoio Coppito 1, I-67010 Laquila, Italy Scuola Normale Super Pisa, Piazza Cavalieri 7, I-56126 Pisa, Italy
机构:
[1] Scuola Normale Super Pisa, Piazza Cavalieri 7, I-56126 Pisa, Italy
[2] CNR, Ctr S3, Inst Nanosci, Via Campi 213-A, I-41125 Modena, Italy
[3] Univ LAquila, Dept Phys & Chem Sci, Via Vetoio Coppito 1, I-67010 Laquila, Italy
关键词:
Water polymorphism;
Graph theory;
LDL;
HDL;
VHDA;
Water network;
PROTON-TRANSFER;
CENTRALITY;
NETWORK;
TRANSITION;
COMMUNICABILITY;
ANOMALIES;
BEHAVIOR;
MODEL;
ICE;
D O I:
10.1016/j.molliq.2022.118922
中图分类号:
O64 [物理化学(理论化学)、化学物理学];
学科分类号:
070304 ;
081704 ;
摘要:
ABSTR A C T We present in this paper a computational approach based on molecular dynamics simulations and graph theory to characterize the structure of liquid water considering not only the local structural arrangement within the first (or second) hydration shell, but also the medium-to long-range order. In particular, a new order parameter borrowed from the graph-theory framework, i.e., the node total communicability (NTC), is introduced to analyze the dynamic network of water molecules in the liquid phase. This order param-eter is able not only to accurately report on the different high-density-liquid (HDL) and low-density-liquid (LDL) water phases postulated in the liquid-liquid phase transition hypothesis, but also to show that HDL-like forms are not homogeneous but rather composed by regions at different local density. In particular, the presence of patches at very high density with an increased number of interstitial water molecules is unveiled, both under pressure and at ambient conditions.(c) 2022 Elsevier B.V. All rights reserved.
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共 65 条
[1]
A general purpose model for the condensed phases of water: TIP4P/2005
[J].
Abascal, JLF
;
Vega, C
.
JOURNAL OF CHEMICAL PHYSICS,
2005, 123 (23)

Abascal, JLF
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Complutense, Fac Ciencias Quim, Dept Quim Fis, E-28040 Madrid, Spain Univ Complutense, Fac Ciencias Quim, Dept Quim Fis, E-28040 Madrid, Spain

Vega, C
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Complutense, Fac Ciencias Quim, Dept Quim Fis, E-28040 Madrid, Spain Univ Complutense, Fac Ciencias Quim, Dept Quim Fis, E-28040 Madrid, Spain
[2]
Widom line and the liquid-liquid critical point for the TIP4P/2005 water model
[J].
Abascal, Jose L. F.
;
Vega, Carlos
.
JOURNAL OF CHEMICAL PHYSICS,
2010, 133 (23)

Abascal, Jose L. F.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Complutense Madrid, Fac Ciencias Quim, Dept Quim Fis, E-28040 Madrid, Spain Univ Complutense Madrid, Fac Ciencias Quim, Dept Quim Fis, E-28040 Madrid, Spain

Vega, Carlos
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Complutense Madrid, Fac Ciencias Quim, Dept Quim Fis, E-28040 Madrid, Spain Univ Complutense Madrid, Fac Ciencias Quim, Dept Quim Fis, E-28040 Madrid, Spain
[3]
Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
[J].
Abraham, Mark James
;
Murtola, Teemu
;
Schulz, Roland
;
Páll, Szilárd
;
Smith, Jeremy C.
;
Hess, Berk
;
Lindah, Erik
.
SoftwareX,
2015, 1-2
:19-25

Abraham, Mark James
论文数: 0 引用数: 0
h-index: 0
机构:
Theoretical Biophysics, Science for Life Laboratory, KTH Royal Institute of Technology, Solna Theoretical Biophysics, Science for Life Laboratory, KTH Royal Institute of Technology, Solna

Murtola, Teemu
论文数: 0 引用数: 0
h-index: 0
机构:
Center for Biomembrane Research, Department of Biochemistry and Biophysics, Stockholm University, Stockholm Theoretical Biophysics, Science for Life Laboratory, KTH Royal Institute of Technology, Solna

Schulz, Roland
论文数: 0 引用数: 0
h-index: 0
机构:
Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, 37831, TN
Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, M407 Walters Life Sciences, 1414 Cumberland Avenue, Knoxville, 37996, TN Theoretical Biophysics, Science for Life Laboratory, KTH Royal Institute of Technology, Solna

Páll, Szilárd
论文数: 0 引用数: 0
h-index: 0
机构:
Theoretical Biophysics, Science for Life Laboratory, KTH Royal Institute of Technology, Solna Theoretical Biophysics, Science for Life Laboratory, KTH Royal Institute of Technology, Solna

Smith, Jeremy C.
论文数: 0 引用数: 0
h-index: 0
机构:
Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, 37831, TN
Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, M407 Walters Life Sciences, 1414 Cumberland Avenue, Knoxville, 37996, TN Theoretical Biophysics, Science for Life Laboratory, KTH Royal Institute of Technology, Solna

Hess, Berk
论文数: 0 引用数: 0
h-index: 0
机构:
Theoretical Biophysics, Science for Life Laboratory, KTH Royal Institute of Technology, Solna Theoretical Biophysics, Science for Life Laboratory, KTH Royal Institute of Technology, Solna

Lindah, Erik
论文数: 0 引用数: 0
h-index: 0
机构:
Theoretical Biophysics, Science for Life Laboratory, KTH Royal Institute of Technology, Solna
Center for Biomembrane Research, Department of Biochemistry and Biophysics, Stockholm University, Stockholm Theoretical Biophysics, Science for Life Laboratory, KTH Royal Institute of Technology, Solna
[4]
X-ray and Neutron Scattering of Water
[J].
Amann-Winkel, Katrin
;
Bellissent-Funel, Marie-Claire
;
Bove, Livia E.
;
Loerting, Thomas
;
Nilsson, Anders
;
Paciaroni, Alessandro
;
Schlesinger, Daniel
;
Skinner, Lawrie
.
CHEMICAL REVIEWS,
2016, 116 (13)
:7570-7589

Amann-Winkel, Katrin
论文数: 0 引用数: 0
h-index: 0
机构:
Stockholm Univ, Dept Phys, AlbaNova Univ Ctr, SE-10691 Stockholm, Sweden Stockholm Univ, Dept Phys, AlbaNova Univ Ctr, SE-10691 Stockholm, Sweden

论文数: 引用数:
h-index:
机构:

Bove, Livia E.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Paris 06, IMPMC, CNRS UMR 7590, F-75252 Paris, France
Ecole Polytech Fed Lausanne, Inst Condensed Matter Phys, CH-1015 Lausanne, Switzerland Stockholm Univ, Dept Phys, AlbaNova Univ Ctr, SE-10691 Stockholm, Sweden

论文数: 引用数:
h-index:
机构:

Nilsson, Anders
论文数: 0 引用数: 0
h-index: 0
机构:
Stockholm Univ, Dept Phys, AlbaNova Univ Ctr, SE-10691 Stockholm, Sweden Stockholm Univ, Dept Phys, AlbaNova Univ Ctr, SE-10691 Stockholm, Sweden

Paciaroni, Alessandro
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Perugia, Dipartimento Fis & Geol, Via Alessandro Pascoli, I-06123 Perugia, Italy Stockholm Univ, Dept Phys, AlbaNova Univ Ctr, SE-10691 Stockholm, Sweden

Schlesinger, Daniel
论文数: 0 引用数: 0
h-index: 0
机构:
Stockholm Univ, Dept Phys, AlbaNova Univ Ctr, SE-10691 Stockholm, Sweden Stockholm Univ, Dept Phys, AlbaNova Univ Ctr, SE-10691 Stockholm, Sweden

Skinner, Lawrie
论文数: 0 引用数: 0
h-index: 0
机构:
SUNY Stony Brook, Inst Mineral Phys, Stony Brook, NY 11794 USA Stockholm Univ, Dept Phys, AlbaNova Univ Ctr, SE-10691 Stockholm, Sweden
[5]
Theoretical modeling of chemical reactions in complex environments: The intramolecular proton transfer in aqueous malonaldehyde
[J].
Aschi, Massimiliano
;
D'Abramo, Marco
;
Ramondo, Fabio
;
Daidone, Isabella
;
D'Alessandro, Maira
;
Di Nola, Alfredo
;
Amadei, Andrea
.
JOURNAL OF PHYSICAL ORGANIC CHEMISTRY,
2006, 19 (8-9)
:518-530

Aschi, Massimiliano
论文数: 0 引用数: 0
h-index: 0
机构: Univ Aquila, Dipartimento Chim Ingn Chim & Mat, I-67010 Laquila, Italy

D'Abramo, Marco
论文数: 0 引用数: 0
h-index: 0
机构: Univ Aquila, Dipartimento Chim Ingn Chim & Mat, I-67010 Laquila, Italy

Ramondo, Fabio
论文数: 0 引用数: 0
h-index: 0
机构: Univ Aquila, Dipartimento Chim Ingn Chim & Mat, I-67010 Laquila, Italy

Daidone, Isabella
论文数: 0 引用数: 0
h-index: 0
机构: Univ Aquila, Dipartimento Chim Ingn Chim & Mat, I-67010 Laquila, Italy

D'Alessandro, Maira
论文数: 0 引用数: 0
h-index: 0
机构: Univ Aquila, Dipartimento Chim Ingn Chim & Mat, I-67010 Laquila, Italy

Di Nola, Alfredo
论文数: 0 引用数: 0
h-index: 0
机构: Univ Aquila, Dipartimento Chim Ingn Chim & Mat, I-67010 Laquila, Italy

Amadei, Andrea
论文数: 0 引用数: 0
h-index: 0
机构: Univ Aquila, Dipartimento Chim Ingn Chim & Mat, I-67010 Laquila, Italy
[6]
From anomalies in neat liquid to structure, dynamics and function in the biological world
[J].
Bagchi, Biman
.
CHEMICAL PHYSICS LETTERS,
2012, 529
:1-9

论文数: 引用数:
h-index:
机构:
[7]
Hydrogen bond network topology in liquid water and methanol: a graph theory approach
[J].
Bako, Imre
;
Bencsura, Akos
;
Hermannson, Kersti
;
Balint, Szabolcs
;
Grosz, Tamas
;
Chihaia, Viorel
;
Olah, Julianna
.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS,
2013, 15 (36)
:15163-15171

Bako, Imre
论文数: 0 引用数: 0
h-index: 0
机构:
Hungarian Acad Sci, Res Ctr Nat Sci, Inst Organ Chem, H-1025 Budapest, Hungary Hungarian Acad Sci, Res Ctr Nat Sci, Inst Organ Chem, H-1025 Budapest, Hungary

Bencsura, Akos
论文数: 0 引用数: 0
h-index: 0
机构:
Hungarian Acad Sci, Res Ctr Nat Sci, Inst Organ Chem, H-1025 Budapest, Hungary Hungarian Acad Sci, Res Ctr Nat Sci, Inst Organ Chem, H-1025 Budapest, Hungary

Hermannson, Kersti
论文数: 0 引用数: 0
h-index: 0
机构:
Angstromlaboratoriet, SE-75121 Uppsala, Sweden Hungarian Acad Sci, Res Ctr Nat Sci, Inst Organ Chem, H-1025 Budapest, Hungary

Balint, Szabolcs
论文数: 0 引用数: 0
h-index: 0
机构:
Hungarian Acad Sci, Res Ctr Nat Sci, Inst Organ Chem, H-1025 Budapest, Hungary Hungarian Acad Sci, Res Ctr Nat Sci, Inst Organ Chem, H-1025 Budapest, Hungary

Grosz, Tamas
论文数: 0 引用数: 0
h-index: 0
机构:
Hungarian Acad Sci, Res Ctr Nat Sci, Inst Organ Chem, H-1025 Budapest, Hungary Hungarian Acad Sci, Res Ctr Nat Sci, Inst Organ Chem, H-1025 Budapest, Hungary

Chihaia, Viorel
论文数: 0 引用数: 0
h-index: 0
机构:
Romanian Acad Spl, Inst Phys Chem, Bucharest 77208, Romania
Julich Supercomputing Ctr, D-52425 Julich, Germany Hungarian Acad Sci, Res Ctr Nat Sci, Inst Organ Chem, H-1025 Budapest, Hungary

Olah, Julianna
论文数: 0 引用数: 0
h-index: 0
机构:
Budapest Univ Technol & Econ, Hungarian Acad Sci, Dept Inorgan & Analyt Chem, H-1521 Budapest, Hungary
Budapest Univ Technol & Econ, Hungarian Acad Sci, Mat Struct & Modeling Res Grp, H-1521 Budapest, Hungary Hungarian Acad Sci, Res Ctr Nat Sci, Inst Organ Chem, H-1025 Budapest, Hungary
[8]
ON THE LIMITING BEHAVIOR OF PARAMETER-DEPENDENT NETWORK CENTRALITY MEASURES
[J].
Benzi, Michele
;
Klymko, Christine
.
SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS,
2015, 36 (02)
:686-706

论文数: 引用数:
h-index:
机构:

Klymko, Christine
论文数: 0 引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Ctr Appl Sci Comp, Livermore, CA 94550 USA Emory Univ, Dept Math & Comp Sci, Atlanta, GA 30322 USA
[9]
Total communicability as a centrality measure
[J].
Benzi, Michele
;
Klymko, Christine
.
JOURNAL OF COMPLEX NETWORKS,
2013, 1 (02)
:124-149

论文数: 引用数:
h-index:
机构:

Klymko, Christine
论文数: 0 引用数: 0
h-index: 0
机构:
Emory Univ, Dept Math & Comp Sci, Atlanta, GA 30322 USA Emory Univ, Dept Math & Comp Sci, Atlanta, GA 30322 USA
[10]
Two-structure thermodynamics for the TIP4P/2005 model of water covering supercooled and deeply stretched regions
[J].
Biddle, John W.
;
Singh, Rakesh S.
;
Sparano, Evan M.
;
Ricci, Francesco
;
Gonzalez, Miguel A.
;
Valeriani, Chantal
;
Abascal, Jose L. F.
;
Debenedetti, Pablo G.
;
Anisimov, Mikhail A.
;
Caupin, Frederic
.
JOURNAL OF CHEMICAL PHYSICS,
2017, 146 (03)

Biddle, John W.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA
Univ Maryland, Dept Chem & Biomol Engn, College Pk, MD 20742 USA
Harvard Med Sch, Dept Syst Biol, Boston, MA 02115 USA Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA

Singh, Rakesh S.
论文数: 0 引用数: 0
h-index: 0
机构:
Princeton Univ, Dept Chem & Biol Engn, Princeton, NJ 08544 USA
Johns Hopkins Univ, Dept Chem, Charles & 34th St, Baltimore, MD 21218 USA Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA

Sparano, Evan M.
论文数: 0 引用数: 0
h-index: 0
机构:
Princeton Univ, Dept Chem & Biol Engn, Princeton, NJ 08544 USA Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA

Ricci, Francesco
论文数: 0 引用数: 0
h-index: 0
机构:
Princeton Univ, Dept Chem & Biol Engn, Princeton, NJ 08544 USA Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA

Gonzalez, Miguel A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Complutense Madrid, Fac Ciencias Quim, Dept Quim Fis 1, E-28040 Madrid, Spain
Imperial Coll London, Dept Chem, London SW7 2AZ, England Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA

Valeriani, Chantal
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Complutense Madrid, Fac Ciencias Quim, Dept Quim Fis 1, E-28040 Madrid, Spain Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA

Abascal, Jose L. F.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Complutense Madrid, Fac Ciencias Quim, Dept Quim Fis 1, E-28040 Madrid, Spain Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA

Debenedetti, Pablo G.
论文数: 0 引用数: 0
h-index: 0
机构:
Princeton Univ, Dept Chem & Biol Engn, Princeton, NJ 08544 USA Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA

Anisimov, Mikhail A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA
Univ Maryland, Dept Chem & Biomol Engn, College Pk, MD 20742 USA
Russian Acad Sci, Oil & Gas Res Inst, Moscow 119333, Russia Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA

Caupin, Frederic
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Lyon, Univ Claude Bernard Lyon 1, CNRS, Inst Lumiere Mat, F-69622 Villeurbanne, France Univ Maryland, Inst Phys Sci & Technol, College Pk, MD 20742 USA