Microbial diversity in deep-sea sediments from the Menez Gwen hydrothermal vent system of the Mid-Atlantic Ridge

被引:25
作者
Cerqueira, Teresa [1 ,2 ]
Pinho, Diogo [3 ]
Egas, Conceicao [3 ]
Froufe, Hugo [3 ]
Altermark, Bjorn [4 ]
Candeias, Carla [5 ]
Santos, Ricardo S. [1 ,2 ]
Bettencourt, Raul [1 ,2 ]
机构
[1] Univ Azores, IMAR Ctr, P-9901862 Horta, Portugal
[2] Univ Azores, MARE Marine & Environm Sci Ctr, Dept Oceanog & Fisheries, P-9901862 Horta, Portugal
[3] Next Generat Sequencing Unit BIOCANT, P-3060197 Cantanhede, Portugal
[4] Univ Tromso, Fac Sci & Technol, Dept Chem, N-9037 Tromso, Norway
[5] Univ Aveiro, GeoBioTec Geobiosci Geotechnol & Geoengn Res Ctr, P-3810193 Aveiro, Portugal
关键词
Chemosynthetic environment; Deep-sea sediments; Microbial ecology; 454; pyrosequencing; 16S rRNA gene; 16S RIBOSOMAL-RNA; BACTERIAL DIVERSITY; EPSILON-PROTEOBACTERIA; GUAYMAS BASIN; GENE DATABASE; DNA; COMMUNITIES; EXTRACTION; ARCHAEAL; METHANE;
D O I
10.1016/j.margen.2015.09.001
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Deep-sea hydrothermal sediments are known to support remarkably diverse microbial consortia. Culture-independent sequence-based technologies have extensively been used to disclose the associated microbial diversity as most of the microorganisms inhabiting these ecosystems remain uncultured. Here we provide the first description of the microbial community diversity found on sediments from Menez Gwen vent system. We compared hydrothermally influenced sediments, retrieved from an active vent chimney at 812 m depth, with non-hydrothermally influenced sediments, from a 1400 m depth bathyal plain. Considering the enriched methane and sulfur composition of Menez Gwen vent fluids, and the sediment physicochemical properties in each sampled area, we hypothesized that the site-associated microbes would be different. To address this question, taxonomic profiles of bacterial, archaeal and micro-eukaiyotic representatives were studied by rRNA gene tag pyrosequencing. Communities were shown to be significantly different and segregated by sediment geographical area. Specific mesophilic, thermophilic and hyperthermophilic archaeal (e.g., Archaeoglobus, ANME-1) and bacterial (e.g., Caldithrix, Thermodesulfobacteria) taxa were highly abundant near the vent chimney. In contrast, bathyal-associated members affiliated to more ubiquitous phylogroups from deep-ocean sediments (e.g., Thaumarchaeota MGI, Gamma- and Alphaproteobacteria). This study provides a broader picture of the biological diversity and microbial biogeography, and represents a preliminary approach to the microbial ecology associated with the deep-sea sediments from the Menez Gwen hydrothermal vent field. (c) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:343 / 355
页数:13
相关论文
共 77 条
  • [1] DNA extractions from deep subseafloor sediments: Novel cryogenic-mill-based procedure and comparison to existing protocols
    Alain, Karine
    Callac, Nolwenn
    Ciobanu, Maria-Cristina
    Reynaud, Yann
    Duthoit, Frederique
    Jebbar, Mohamed
    [J]. JOURNAL OF MICROBIOLOGICAL METHODS, 2011, 87 (03) : 355 - 362
  • [2] Alterman N.H., 2013, FRONT MICROBIOL, V4
  • [3] Catabolic and anabolic energy for chemolithoautotrophs in deep-sea hydrothermal systems hosted in different rock types
    Amend, Jan P.
    McCollom, Thomas M.
    Hentscher, Michael
    Bach, Wolfgang
    [J]. GEOCHIMICA ET COSMOCHIMICA ACTA, 2011, 75 (19) : 5736 - 5748
  • [4] Anderson MJ, 2008, PERMANOVA PRIMER GUI
  • [5] [Anonymous], 2006, Primer
  • [6] [Anonymous], GEOL MAG
  • [7] [Anonymous], 2013, PHEATMAP PRETTY HEAT
  • [8] A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in archaea
    Berg, Ivan A.
    Kockelkorn, Daniel
    Buckel, Wolfgang
    Fuchs, Georg
    [J]. SCIENCE, 2007, 318 (5857) : 1782 - 1786
  • [9] Sequencing our way towards understanding global eukaryotic biodiversity
    Bik, Holly M.
    Porazinska, Dorota L.
    Creer, Simon
    Caporaso, J. Gregory
    Knight, Rob
    Thomas, W. Kelley
    [J]. TRENDS IN ECOLOGY & EVOLUTION, 2012, 27 (04) : 233 - 243
  • [10] Borowski C., 2010, MENEZKART POSEIDON C